BAC Information

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BAC

Clone NameMSMg01-462J24
Chromosome15 (Build37)
Map Location 79,603,621 - 79,604,109
singlet/doubletsinglet
Overlap geneDnalc4
Upstream geneMfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b
Downstream geneNpcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981, Tnrc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462J24.T7 (MSMg01no462_j24.b1)MSMg01-462J24.TJ (MSMg01no462_j24.g1)
ACCAG547468AG547469
length747767
length of high quality
(start - end)		243 (80 - 322)466 (81 - 546)
definitionCHROMAT_FILE: MSMg01no462_j24.b1 PHD_FILE: MSMg01no462_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:42 2005CHROMAT_FILE: MSMg01no462_j24.g1 PHD_FILE: MSMg01no462_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTCCCTATAATTGCGGCCGCTAAACGACTCCTATATTTCGNAAATCG
GCGGAATTCACTTTGTATACCAAAAAGGCCTTGAACTCAGAAATCTGCCT
GCCTCTGCCTCCCAAGTGCTGGTATTACAGGCGTTTGCCACCACGCCCAG
CTCGCTCTTTCTTTCTTTTCAAGACAGGGTTTCTTTGTGTACTTGCTCTT
TGGACCCAGACTGGCCTCGAACTCTGAGCTTCGCCTTCCTCTCCTTCCCA
AGCGCTGGGACTAAAGGCATGCACCACTGATAACGGGCAAAATGTGTAGG
GCAGGGTGGCCTTGAACTTGTGATTTTTCTGCCACCATCCCCTTCAGAAA
ATCTTACCATGTGTACCGCCACCACCAGAGCCAGCTGTGTTTTATTTTTT
TGAGACAGGGTTTTACTGGGCAGCCCTGGCTAAGATTAGAGGCAGGGGCC
ACTGTACCCATGAAAGGGAGAAATTAAGCTAGGGTTTATACTCTGGCCTA
TTATCCCATGCTGGGGCAGTCTCTTTCCTTCCTCCCTGCCTACCTACCCA
GGCAGAGCTCCTTCCACTTCTAAGAGCTGGGGTGTCTCTCCTGGCACCTG
AGTACACCCTTTTTTGTCCCCTTTGTTTTGTTTTGCTTTGGTTTGGCTTG
CTTGTTGTTGGATGAAAGTGGTGCTAACTCACACAACTTTCCCTCTCCTC
CTCTCTTCCCTCCTTCTCTTTTTTTCTTCTCTTACTCTCCATTCTCT

ATTTCTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGCCACAGGGGAAGAGCA
GAGCCAGACAGCAGGCCTGAAGTTCATCTGCAGACAGTGGCTACTGAGTG
GGATACTGCGCAGGAAAGCACTGGGCTCTTCCCAGGAGGGAAAGAGTGAG
GTCGTAACAGACAAAAAGAAGAAATTAGGGGGTGGAGGAAATGGGTCAGT
TTATAAAGTGCTTGCTACAAAAGTATGAAGACCGGAGTTTTCTATCCCAG
CACCCGTGTAAAGCCTGTGAGCCCAGAATTGGAGAGGCAGCTGAGAGGAT
GGATCCTTGGAAGCCATGAAGCCCAGTGGTGAGCTCCTGGCACCAAAGAG
GGAGACCCTGTCTCAAACAATAAGGTGGAGAGTGATTGTGTAAGACACCA
TGTTGACTTCCAGCCTCCACATGTAACTGCACACGCAGGAACGCACATAC
ACACAGAAAAAAGACAAGTGAGCAAGTACCGTCTACACTGGACTGGACCC
TTTGTACTTCATTTTGCCNAGGAGATGAACTTCAGACTATTGGCTTTATA
GATGCCCTGACCAGGTGCCCAAAGAGATCCTAGGTAGTTTCTTACCCTTG
GGAATCCCAACTTAATTTTGGCCAAATTTTTTGGTTTTAACTAATAGGGT
TAGGGAAAAACCCCCTTTCTTTTGGGGCGGTTTTAAGGTTAATTTCCCCC
TAAAATTTTTTCTTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_j24.g1 MSMg01no462_j24.g1 CHROMAT_FILE:
MSMg01no462_j24.g1 PHD_FILE: MSMg01no462_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:42 2005
         (466 letters)



>mm_chr15_79603421_79604286
          Length = 866

 Score =  731 bits (378), Expect = 0.0
 Identities = 450/496 (90%), Gaps = 37/496 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagccacaggggaagagcagagccagacagcaggcctgaagttcatctgcagacagtgg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ctagccacaggggaagagcagagccagacagcaggcctgaggttcatctgcagacagtgg 260

                                                                       
Query: 61  ctactgagtgggatactgcgcaggaaagcactgggctcttcccaggagggaaagagtgag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ctactgagtgggatactgcgcaggaaagcactgggctcttcccaggagggaaagtgtgag 320

                                                                       
Query: 121 gtcgtaacagacaaaaagaagaaattagggggtggaggaaatgggtcagtttataaagtg 180
           ||| ||||||||||||||||||||||||||||||||||       |||||||||||||||
Sbjct: 321 gtcataacagacaaaaagaagaaattagggggtggagg-------tcagtttataaagtg 373

                                                                       
Query: 181 cttgctacaaaagtatgaagaccggagttttctatcccagcacccgtgtaaag------- 233
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||       
Sbjct: 374 cttgctacaaaagtatgaagaccagagttttctatcccagcacccgtgtaaagggctggg 433

                                                                       
Query: 234 -------------cctgtgagcccagaattggagaggcagctgagaggatggatccttgg 280
                        ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 434 tgaggcggccatgcctgtgagcccagcattggagaggcagctgagaggatggatccttgg 493

                                                                       
Query: 281 aagc--------catgaagcccagtggtgagctcctggcaccaaagagggagaccctgtc 332
           ||||        |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 494 aagctcattagccatgaagcccagtggtgagctcctggcatcaaagagggagaccctgtc 553

                                                                       
Query: 333 tcaaacaataaggtggagagtgattgtgtaagacacc--atgttgacttccagcctccac 390
           ||| |||||||||||||||||||||||| ||||||||  |||||||||||||||||||||
Sbjct: 554 tcagacaataaggtggagagtgattgtgaaagacaccgaatgttgacttccagcctccac 613

                                                                       
Query: 391 atgtaactgcacacgcaggaacgcacatacacacagaaaaaagacaagtgagcaagtacc 450
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atgtaactgcacacacaggaacgcacatacacacagaaaaaagacaagtgagcaagtacc 673

                           
Query: 451 gtctacactggactgg 466
           ||||||||||||||||
Sbjct: 674 gtctacactggactgg 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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