BAC Information

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BAC

Clone NameMSMg01-462O01
Chromosome15 (Build37)
Map Location 55,372,106 - 55,372,343
singlet/doubletsinglet
Overlap geneMrpl13
Upstream geneMal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6, Col14a1
Downstream geneMtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462O01.T7 (MSMg01no462_o01.b1)MSMg01-462O01.TJ (MSMg01no462_o01.g1)
ACCAG547661AG547662
length863797
length of high quality
(start - end)
36 (71 - 106)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no462_o01.b1 PHD_FILE: MSMg01no462_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:02 2005CHROMAT_FILE: MSMg01no462_o01.g1 PHD_FILE: MSMg01no462_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAATTTGCNNCCGCTATACAACTCACTATATTCGTACCTCCGCGNAATT
CTAATTAATTTACTTTATGTATGTAACTTTCAGGCACTTTATTAATTTAA
AGACTGNCCTGATTATTGACAATCTATAGATGTATTTTTATCAAATACTA
CTGCTGTANAAATGCAATGATGTATTTTTTTTATTCTCCCCNNNCTATTA
AATANNNTTTTNNTTTTTTTTTAAAACCAAAAAAATNCNTNCNNNCCCNT
TTTTTTTTCACCCCCCCCCCCCCCCAACCNNAACCCCCCCTTTCCCCCCC
CCNCCCCCNCTCCCCCCCCCCTTTTCCTCCCTTTCNNCCCNCCNCCCCCC
CCCTCNCCCCCCCNNCCCTTTTTTCTCCCCCCCCCCCCCCCTCCCCTTCC
CCTCTTCCCCCCTCCTTTCTCTCTTTCCTCCCTCTCTTCCCCCTTCTTCC
TTCCTCTTTTCCCCCCTTTTCCCTCCTTTTTTCTCTCTCCCCCTTCCTCC
CCCNCTCCTTTCCCCTCTTTCCCCTCCTTCTCTTTTTCTCTCCTCCCCCC
TCCTCTCCCCTCCCTCTTCTTCTCCCTTGTGGTGGTGGAGGTGGGGGGTC
GCCTATTTGGCTCCNTTTTCCNCCCCTTCTCTCCCTTCCCTCTTCCTCCC
CTCTCCTCCTCCTTTTCCTCCTCTTTTCTTTTCTCTTCCCCCCCTCTTCT
TTTCTCCTCCTCCAATACAGGAGGGGGAGGGGGGTGCCTGCCTCNTTTTC
TTCCTCCTTTCTCTCTTCCTTTCCCTTTTTTCTCCCTCTTCTTTCCTCCC
TTTTCTTTCCCTTTTCTTTTTCCTTCCCCTTTTCTTCTCCCTTCCTTCGT
TATATGGGGTGTC
TCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTACAGCATTTGATAGATAGAT
GGAATTAGGTCACTCTATCTGCACTCAGTTTTCTCTGCTGCTAGCTGCAG
CTGGTTCCAGTACTTGCTTCACAGCATCATCCATACATTGTTAAAATGTG
ACGCACTGACTACCATGCAAGTAGTGAATTGTTGGTGGATAGTCACTGGT
GACCACTGCTGCCATCTTGTGTCTTATGTCAGTGTCACCACACTCATGAT
TGGTGTTGTGAAGTTAAATGCTTCATTTGTTCTTTCCTCCTGGCAGGAAA
AAGGGATGGCCTCCCCATGGGGCTTCGTTGGTATAAACTTTAAAAAACCG
GGTTTTATTTGGAACGCCCAACCCACAAAAATAGGGGTGTTTTTTCCCCG
CCCCCTTCCCGCTTGCGGTCCCCTTTTATCCCCCCCGTACAAAATTATAT
TTCCTTATGAACCCTCCCCCTATGAAATTACACTTTTCTTCATCAATATA
AATACACTCTCTCCCCCCCCTTTTTTTGTGGGCTTATCCCTTCATTATCT
TTCCCCACCACCTTTTTTTATTTCTGTCGTCCTTTTTTCCCTTCCATCTT
TTCTCTTTTTTACTTTTTACTCCCCATTTACTTAACAGTCCATTATCAAC
TTTCTCCCCTCCATTTATACTCTTTTTTTCTCACATTTCTCTAAACACCA
TTCCTACAATATTCCTTATATCATTACTCAACCTTTCCACAATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_o01.g1 MSMg01no462_o01.g1 CHROMAT_FILE:
MSMg01no462_o01.g1 PHD_FILE: MSMg01no462_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:02 2005
         (242 letters)



>mm_chr15_55371906_55372543
          Length = 638

 Score =  389 bits (201), Expect = e-113
 Identities = 232/243 (95%), Gaps = 6/243 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtacagcatttgatagatagatggaattaggtcactctatctgcactcagttttctct 60
           |||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 438 cagtacagcatttgattgatagatggaattaggtca--ctatctgcactcagttttctct 381

                                                                       
Query: 61  gctgctagctgcagctggttccagtacttgcttcacagcatcatccatacattgttaaaa 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gctgctagctgcggctggttccagtacttgcttcacagcatcatccatacattgttaaaa 321

                                                                       
Query: 121 tgtgacgcactgactaccatgcaagtagtgaattgttggtggatagtcactggtgaccac 180
           |||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 320 tgtgacacactgactaccatgcaagtagtgaattgttggtggataatcactg-tgaccac 262

                                                                       
Query: 181 tgctgccatcttgtgtctta-tgtcagtgtcaccacactcatgattggtgttgtgaagtt 239
           |||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct: 261 tgctgccaacttgtgtcttactgtcagtgtcaccacactca-gattggt-ttgtgaagtt 204

              
Query: 240 aaa 242
           |||
Sbjct: 203 aaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 638
Length adjustment: 9
Effective length of query: 233
Effective length of database: 629
Effective search space:   146557
Effective search space used:   146557
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)