BAC Information

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BAC

Clone NameMSMg01-463B01
Chromosome15 (Build37)
Map Location 68,731,965 - 68,768,605
singlet/doubletdoublet
Overlap geneKhdrbs3
Upstream geneZfat1, LOC100041000, EG665945, EG633752
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463B01.T7 (MSMg01no463_b01.b1)MSMg01-463B01.TJ (MSMg01no463_b01.g1)
ACCAG547804AG547805
length744760
length of high quality
(start - end)		599 (52 - 650)374 (85 - 458)
definitionCHROMAT_FILE: MSMg01no463_b01.b1 PHD_FILE: MSMg01no463_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:18 2005CHROMAT_FILE: MSMg01no463_b01.g1 PHD_FILE: MSMg01no463_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,768,012 - 68,768,605)(68,731,965 - 68,732,338)
sequence
TTTTTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGG
ATCCGCGGAATTCTTATAGTCTCTAGATATAGTGATCCAGTATTCAGCAC
TGTTAAAAAAAATCACCTTAAAAGAGAGGCATGTTTGTTTTTCTAAAACC
CTCCTGTGGCTCTGTCCCTGGCACAGGCAGGCCCTCTAACTCACTCTTGT
CAATAGCAGCAAAAGGCATGAATAGGCAGAAAACCCCACACCAGCTGACA
AACCTTTCTTACTGTTGCTTGCTGTGTATCTCAGACTTTGATATGCATGC
CCCAATGCAAACTAACTCTGAGAACTGTAATTCCACTTTGAAGGAACAGA
CCACAATGGCCCATAGCCACAAGCCAGACCATCCTAGCTAGCTCAGAGTG
GTCAATCTAGCGTTTGTAGAGTCTTTCATTAGGTCACAGAGCCTTCTCTA
GACTCAAACAGTTAACTGATCCTGTGACCGCCATTACTTTATCTGTAAAA
TGAGATGAACAAAATTCGTTTCACATAGTAGTACCAGGACTAAATGAACT
ATGTGAAGAGCAAGCTAGCAACTGTGCACAGCACCCCTTAGGAACTCAGA
AGCATGAGCAACTAGACNAAAACATGCCTCTGTGTCCTGAAATGATGGCA
AAAGTAGACTAAATTTGAAGGAAAAATAGTAGAAATGCATGAAACCCCAA
GAAAAGGCAGCGTGTGCATCAGCGCTAATTTCCGGTCAGGAATT

NNNNNNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGGAGCAGAAGACA
ACTGACATTTCTTTAAATACTGCTGCTTACTGTAGGAGCAAAAGTAGGCA
GAGTGGCAGGAAGCTTGGTTGATATAAATACATACTGCAAACCAACTAAA
AGACAATTTGTATAGTTTTCAGGACTGATAGACTTTTGTCCCTAAAGCAA
TGGGTGAAGTAGAAGCTTGAATATTGCTCCACTCAGGACCTTCCTCTGAA
CTTGTGTAGCCAGGGCTGCTTCTCCCTAAGGCAACGTGAAGGAGTAGATA
CCAAACTGGAAATTGTATTTGCTTTTCATCTTCTACTAGGATATGGGAGT
CAACGATCCAGTAACACAATTGCCGTGTGCCAATTGCATTTGAAATAATT
GCTGATAAAATCAGAAAGAAAACTTCAGCAAATCTGAAAACCGATTATGG
CAGAACTCCCTGCCAAAATGGCCCGATATTAAATATTCGCCCCCGTGCTG
CATTCCGTTCTTTATATCGACATTAGCTGCCCCTTCGCTTCCTCCCACTT
GGTATCATTGTCCTCCTTTGTCTTTGCCCCCCGGTTTTTACTCTTACTTT
CCTTCTCTTTCCTTGCTCTTCTCTCCTTTCCCTTTTCTTTTCTTTTCTCA
TTTTTTTTGCTTTTTCTCCCCGTTACCTCTCATGGTCCCCTGCCCTTCTT
TTCTCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_b01.b1 MSMg01no463_b01.b1 CHROMAT_FILE:
MSMg01no463_b01.b1 PHD_FILE: MSMg01no463_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:18 2005
         (599 letters)



>mm_chr15_68767998_68768996
          Length = 999

 Score = 1120 bits (579), Expect = 0.0
 Identities = 590/594 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcttatagtctctagatatagtgatccagtattcagcactgttaaaaaaaatcac 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ggaattcttatagtcactagatatagtgatccagtattcagcactgttaaaaaaaatcac 549

                                                                       
Query: 66  cttaaaagagaggcatgtttgtttttctaaaaccctcctgtggctctgtccctggcacag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cttaaaagagaggcatgtttgtttttctaaaaccctcctgtggctctgtccctggcacag 489

                                                                       
Query: 126 gcaggccctctaactcactcttgtcaatagcagcaaaaggcatgaataggcagaaaaccc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gcaggccctctaactcactcttgtcaatagcagcaaaaggcatgaataggcagaaaaccc 429

                                                                       
Query: 186 cacaccagctgacaaacctttcttactgttgcttgctgtgtatctcagactttgatatgc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cacaccagctgacaaacctttcttactgttgcttgctgtgtatctcagactttgatatgc 369

                                                                       
Query: 246 atgccccaatgcaaactaactctgagaactgtaattccactttgaaggaacagaccacaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atgccccaatgcaaactaactctgagaactgtaattccactttgaaggaacagaccacaa 309

                                                                       
Query: 306 tggcccatagccacaagccagaccatcctagctagctcagagtggtcaatctagcgtttg 365
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 308 tggcccatagccacaagccagaccatcctagttagctcagagtggtcaatctagcgtttg 249

                                                                       
Query: 366 tagagtctttcattaggtcacagagccttctctagactcaaacagttaactgatcctgtg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tagagtctttcattaggtcacagagccttctctagactcaaacagttaactgatcctgtg 189

                                                                       
Query: 426 accgccattactttatctgtaaaatgagatgaacaaaattcgtttcacatagtagtacca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 accgccattactttatctgtaaaatgagatgaacaaaattcgtttcacatagtagtacca 129

                                                                       
Query: 486 ggactaaatgaactatgtgaagagcaagctagcaactgtgcacagcaccccttaggaact 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggactaaatgaactatgtgaagagcaagctagcaactgtgcacagcaccccttaggaact 69

                                                                 
Query: 546 cagaagcatgagcaactagacnaaaacatgcctctgtgtcctgaaatgatggca 599
           ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 68  cagaagcatgagcaactagacaaaaacatgcctctgtgtcctgaaatgacggca 15


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no463_b01.g1 MSMg01no463_b01.g1 CHROMAT_FILE:
MSMg01no463_b01.g1 PHD_FILE: MSMg01no463_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:18 2005
         (374 letters)



>mm_chr15_68731765_68732538
          Length = 774

 Score =  669 bits (346), Expect = 0.0
 Identities = 367/374 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggagcagaagacaactgacatttctttaaatactgctgcttactgtaggagcaaaag 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ttgggagcagaagacaactgacatttctttaaatactgctgtttactgtaggagcaaaag 260

                                                                       
Query: 61  taggcagagtggcaggaagcttggttgatataaatacatactgcaaaccaactaaaagac 120
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggcagagtggcaggtagcatggttgatataaatacatactgcaaaccaactaaaagac 320

                                                                       
Query: 121 aatttgtatagttttcaggactgatagacttttgtccctaaagcaatgggtgaagtagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttgtatagttttcaggactgatagacttttgtccctaaagcaatgggtgaagtagaa 380

                                                                       
Query: 181 gcttgaatattgctccactcaggaccttcctctgaacttgtgtagccagggctgcttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttgaatattgctccactcaggaccttcctctgaacttgtgtagccagggctgcttctc 440

                                                                       
Query: 241 cctaaggcaacgtgaaggagtagataccaaactggaaattgtatttgcttttcatcttct 300
           ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 cctaaggcaacatgaaggagtagaaaccaaactggaaattgtatttgcttttcatcttct 500

                                                                       
Query: 301 actaggatatgggagtcaacgatccagtaacacaattgccgtgtgccaattgcatttgaa 360
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 501 actaggatatgggagtcaacgatccagtaacacaattgtcgtatgccaattgcatttgaa 560

                         
Query: 361 ataattgctgataa 374
           ||||||||||||||
Sbjct: 561 ataattgctgataa 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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