BAC Information

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BAC

Clone NameMSMg01-463F17
Chromosome15 (Build37)
Map Location 52,209,254 - 52,387,027
singlet/doubletdoublet
Overlap geneLOC100039748
Upstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8
Downstream geneThrap6, LOC100039745, Ext1, Samd12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463F17.T7 (MSMg01no463_f17.b1)MSMg01-463F17.TJ (MSMg01no463_f17.g1)
ACCAG548028AG548029
length721743
length of high quality
(start - end)		575 (81 - 655)429 (87 - 515)
definitionCHROMAT_FILE: MSMg01no463_f17.b1 PHD_FILE: MSMg01no463_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:44 2005CHROMAT_FILE: MSMg01no463_f17.g1 PHD_FILE: MSMg01no463_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,209,254 - 52,209,828)(52,386,599 - 52,387,027)
sequence
CGTTTTTTTNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCATTTACTTCCATCACAATATAATCTGCTCCAAAA
CGCAAATGAGTTCTGAGCTATGACCAGTTATTTTCATAAATATTAGTTCA
TTTGTTTCCTCCAACAATCTGTGAAAGTGATGTTTTTATCGCTTCAGAAA
GAACATTAGTTCAAGAACAAACTAAGAGGATGCGTAATTAATAATCTTTC
ACATTCCTGGAGGACTCACTGTGCATCCATTACTTTGTGTGCACGGTCTC
TAACACTAGCAAAGGTAAAAGGAGGTGAATAGCATTTCTCAGTTGGAGTC
CATTTTACCTGCCTGATAACACTTGGTGTTATCTGGAAATAATTTCAGTT
TTCACAGCCAAGTGTGACAGGTGAGAATGAGCATGGCCTTACATCTAAGG
AATAAAAGAATGCTAAGTCAGAACTGTTGCTCCCAACTAAGAATTAATTT
CAGGTAAATGGTAAAAGTACTATGAGGGTTCCCTTAACATTCAGCTGCAG
TAAACCCCAACACAGAGATGAAAAAAAAAAACCTCAGAGTTAGATCTAAG
CCAGTAGTAGCCACTGATGTTTATGTGGAATTTGAACCCAGTCTCTACTG
ACCAGGCAAATTTTGCTGTTACAGCACAGTACACAGAGTTCTAACTTGCT
GCAATCTTAACAAACAAAAAN

GGCCGAAANNCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAATAAAACTAT
GGTTATCCTCACTGCCTCAGTCCATATCTAGACATGACAACAATTTTACA
GACACCATTTAATATAAGTTATTAAGACAAGAAGGTAATACTGAGGTATG
GAGAAATTAGTAACAATGATGCAGAGAATAGAGAAGAAAAAAGTTGAGAA
TTTTGAAAAAGTAAGAGCTTAAAGGAGGGGCCTTGTAGATGTGAAACTCA
GAGCTGAGGGAAAGGCTGCTGTCCAGCTATACTGTTGTTGCTGAGTCTTG
GGGTTCTTCAAAGGCCAGGAAGAAATTCACACTGAATGGAAGACAGCAAT
GGTCAGTGCACAGCAATTTCTCCTAACTTTACATTCCTTAGGGAGTATTG
AGATTCAGGATTTTAATATGCCTTTCTTCCTTGTTTGTTTATTTGTTTGT
TTTTGTAGGGTTTTGTTGTTGNTGNTTNNNNNNNNNNNNTTTTNTTTTTT
TTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTNTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTNTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTNTTNTTTTT
TTTTTTTNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_f17.b1 MSMg01no463_f17.b1 CHROMAT_FILE:
MSMg01no463_f17.b1 PHD_FILE: MSMg01no463_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:44 2005
         (575 letters)



>mm_chr15_52209054_52210028
          Length = 975

 Score = 1089 bits (563), Expect = 0.0
 Identities = 572/575 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatataatctgctccaaaacgcaaatgagttctgagctatgaccagttattttcataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatataatctgctccaaaacgcaaatgagttctgagctatgaccagttattttcataaa 260

                                                                       
Query: 61  tattagttcatttgtttcctccaacaatctgtgaaagtgatgtttttatcgcttcagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattagttcatttgtttcctccaacaatctgtgaaagtgatgtttttatcgcttcagaaa 320

                                                                       
Query: 121 gaacattagttcaagaacaaactaagaggatgcgtaattaataatctttcacattcctgg 180
           |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 321 gaacattagttcaagaacaaactaagagcatgcataattaataatctttcacattcctgg 380

                                                                       
Query: 181 aggactcactgtgcatccattactttgtgtgcacggtctctaacactagcaaaggtaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggactcactgtgcatccattactttgtgtgcacggtctctaacactagcaaaggtaaaa 440

                                                                       
Query: 241 ggaggtgaatagcatttctcagttggagtccattttacctgcctgataacacttggtgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaggtgaatagcatttctcagttggagtccattttacctgcctgataacacttggtgtt 500

                                                                       
Query: 301 atctggaaataatttcagttttcacagccaagtgtgacaggtgagaatgagcatggcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctggaaataatttcagttttcacagccaagtgtgacaggtgagaatgagcatggcctt 560

                                                                       
Query: 361 acatctaaggaataaaagaatgctaagtcagaactgttgctcccaactaagaattaattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatctaaggaataaaagaatgctaagtcagaactgttgctcccaactaagaattaattt 620

                                                                       
Query: 421 caggtaaatggtaaaagtactatgagggttcccttaacattcagctgcagtaaaccccaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggtaaatggtaaaagtactatgagggttcccttaacattcagctgcagtaaaccccaa 680

                                                                       
Query: 481 cacagagatgaaaaaaaaaaacctcagagttagatctaagccagtagtagccactgatgt 540
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacagagatggaaaaaaaaaacctcagagttagatctaagccagtagtagccactgatgt 740

                                              
Query: 541 ttatgtggaatttgaacccagtctctactgaccag 575
           |||||||||||||||||||||||||||||||||||
Sbjct: 741 ttatgtggaatttgaacccagtctctactgaccag 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no463_f17.g1 MSMg01no463_f17.g1 CHROMAT_FILE:
MSMg01no463_f17.g1 PHD_FILE: MSMg01no463_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:44 2005
         (429 letters)



>mm_chr15_52386399_52387227
          Length = 829

 Score =  791 bits (409), Expect = 0.0
 Identities = 424/429 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataataaaactatggttatcctcactgcctcagtccatatctagacatgacaacaattt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cataataaaactgtggttatcctcactgcctcagtccatatctagacatgacaacaattt 570

                                                                       
Query: 61  tacagacaccatttaatataagttattaagacaagaaggtaatactgaggtatggagaaa 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 569 tacagacaccatttaatataagttattaagacaagaaggtaataatgaggtatggagaaa 510

                                                                       
Query: 121 ttagtaacaatgatgcagagaatagagaagaaaaaagttgagaattttgaaaaagtaaga 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttagtaaccatgatgcagagaatagagaagaaaaaagttgagaattttgaaaaagtaaga 450

                                                                       
Query: 181 gcttaaaggaggggccttgtagatgtgaaactcagagctgagggaaaggctgctgtccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gcttaaaggaggggccttgtagatgtgaaactcagagctgagggaaaggctgctgtccag 390

                                                                       
Query: 241 ctatactgttgttgctgagtcttggggttcttcaaaggccaggaagaaattcacactgaa 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctatactgtagttgctgagtcttggggttcttcaaaggccaggaagaaattcacactgaa 330

                                                                       
Query: 301 tggaagacagcaatggtcagtgcacagcaatttctcctaactttacattccttagggagt 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 329 tggaagacagcaatggtcagtgcacagcaatttctcccaactttacattccttagggagt 270

                                                                       
Query: 361 attgagattcaggattttaatatgcctttcttccttgtttgtttatttgtttgtttttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 attgagattcaggattttaatatgcctttcttccttgtttgtttatttgtttgtttttgt 210

                    
Query: 421 agggttttg 429
           |||||||||
Sbjct: 209 agggttttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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