BAC Information

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BAC

Clone NameMSMg01-463N23
Chromosome15 (Build37)
Map Location 103,089,334 - 103,089,857
singlet/doubletsinglet
Overlap genenone
Upstream geneD15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2
Downstream geneCopz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463N23.T7 (MSMg01no463_n23.b1)MSMg01-463N23.TJ (MSMg01no463_n23.g1)
ACCAG548422AG548423
length744754
length of high quality
(start - end)		545 (79 - 623)503 (83 - 585)
definitionCHROMAT_FILE: MSMg01no463_n23.b1 PHD_FILE: MSMg01no463_n23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:27 2005CHROMAT_FILE: MSMg01no463_n23.g1 PHD_FILE: MSMg01no463_n23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTTTGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAA
ATCCGCGGAATTCTCGGAGGACTGCCTCTGAAGGGAAAGAGATGCTACAC
GCTAAGGCTAAAACAGCAGGAGGCTTCCCAGCGACTTGAGTCAGTTTCCC
TGGACTCTAGAGTTTAAGAGTTGAGTCTTGCTGGGTGGTGGTGGCACACA
CCTTTAATCCCAGCACTTGGGAGGCAGAGTCTAGAGTTAGAAAATTCCAG
AAACAAAACAAAACAAAAGCCTTTAGAGCTTAACTTCAACTAGACCTAGG
AGAAATAGGTGTCCTAGCAGCTAATACAACAAGATTTTTTTTTTCTTCTT
CTTTGTTTTTTTCTTTCTTTTTCCTTCTTCCTTCCTTTCTCCCTCTTCCT
TACAAAAATAAAAGTAAAAACAACCAAAAAAAAAAAATCAAAAAACCAAA
AAAACACATTGTCTTACTTTGTAGCCTTGACGTGGAACTCACTTTGTGGC
CCAGGCTGGTCTTGAACTCTTAGTGCTGTTCCTGCCTCAGCTTACTCAGT
GCTAGGATTGCTGGCTTCAGTTACCACGCCCAGTTGAGGACCAAATCTTG
ATTCCGACCCCTCCCCCTTCTTGCTTTTCTCCTAGATATGAATCTTATTA
CCTGTGTTTCAGTAGTGGCGTTTATTATTGGAAGTTAATTTTTAGCTCTG
GGGCCCCCGGTAACATAATCTTTCTGAGCCTTACTTCCTTACCT

CAAATTTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCC
CCATTTTTTAATGGGATTATTTGATTTTCTGAAGTCCACCTTCTTGAGTT
CTTTATGTATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAG
ATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGTACACCCA
CATTCTCAAATGAGGTGAAATCTACTCTGAGACACTGAGAACTGTTTGGG
GAGCCAGGCACTGGTGGTGCACGCTTCTAATCCCATCACTTGGGAGACAG
AGGCAGGCAGATCTCTGTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGGA
GAGAAGTAAGTAGATATTGGTTGAAGCCTACGAGTATACAGCTAGATAAT
GTTAGTTCTAAAGATCTAACTATAAAGTATGGCAGCTATAGTCAATAACA
ATGTGTTATTACCTGAAATTTGTTTAGCAAACCTTAGGTGTTATACACAC
AAACGTGTGTGTGTGTGTGTATATGTGTGTGTGTGNGNGNGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTNNNNNNTNTTTTTTTTTTTNNTTTTTTTTTNTTNTTTNTTTT
TTTTTTTTNTNTTNTTTNTTNTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_n23.b1 MSMg01no463_n23.b1 CHROMAT_FILE:
MSMg01no463_n23.b1 PHD_FILE: MSMg01no463_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:27 2005
         (545 letters)



>mm_chr15_103089134_103090078
          Length = 945

 Score =  920 bits (476), Expect = 0.0
 Identities = 518/546 (94%), Gaps = 23/546 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaagggaaagagatgctacacgctaaggctaaaacagcaggaggcttcccagcgacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaagggaaagagatgctacacgctaaggctaaaacagcaggaggcttcccagcgacttg 260

                                                                       
Query: 61  agtcagtttccctggactctagagtttaagagttgagtcttgctgggtggtggtggcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcagtttccctggactctagagtttaagagttgagtcttgctgggtggtggtggcaca 320

                                                                       
Query: 121 cacctttaatcccagcacttgggaggcagagtctagagttagaaaattccagaaacaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacctttaatcccagcacttgggaggcagagtctagagttagaaaattccagaaacaaaa 380

                                                                       
Query: 181 caaaacaaaagcctttagagcttaacttcaactagacctaggagaaataggtgtcctagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaacaaaagcctttagagcttaacttcaactagacctaggagaaataggtgtcctagc 440

                                                                       
Query: 241 agctaatacaacaagattttttttttcttcttctttgtttttttctttctttttccttct 300
           |||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctaatacaacaagaattaacttttcttcttctttgtttttttctttctttttccttct 500

                                                                       
Query: 301 tccttcctttctccctcttccttacaaaaataaaagtaaaaacaaccaaaaaaaaaaaat 360
           ||||||||||||||||||||||||||||||                      ||||||||
Sbjct: 501 tccttcctttctccctcttccttacaaaaa----------------------aaaaaaat 538

                                                                       
Query: 361 caaaaaaccaaaaaaa-cacattgtcttactttgtagccttgacgtggaactcactttgt 419
           |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 539 caaaaaaccaaaaaaaacacattgtcttactttgtagccttgacatggaactcactttgt 598

                                                                       
Query: 420 ggcccaggctggtcttgaactcttagtgctgttcctgcctcagcttactcagtgctagga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ggcccaggctggtcttgaactcttagtgctgttcctgcctcagcttactcagtgctagga 658

                                                                       
Query: 480 ttgctggcttcagttaccacgcccagttgaggaccaaatcttgattccgacccctccccc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ttgctggcttcagttaccacgcccagttgaggaccaaatcttgattccgacccctccccc 718

                 
Query: 540 ttcttg 545
           ||||||
Sbjct: 719 ttcttg 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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