BAC Information

Click to search

BAC

Clone NameMSMg01-464J02
Chromosome15 (Build37)
Map Location 44,290,942 - 44,291,228
singlet/doubletsinglet
Overlap genePkhd1l1
Upstream geneTtc35, LOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2
Downstream geneEbag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464J02.T7 (MSMg01no464_j02.b1)MSMg01-464J02.TJ (MSMg01no464_j02.g1)
ACCAG548952AG548953
length769782
length of high quality
(start - end)
287 (79 - 365)244 (81 - 324)
definitionCHROMAT_FILE: MSMg01no464_j02.b1 PHD_FILE: MSMg01no464_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:23 2005CHROMAT_FILE: MSMg01no464_j02.g1 PHD_FILE: MSMg01no464_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTATAAATC
CGCGGAATTCAGCCACTTTGCTCAAGTGCAAAGACTATTCCAGTGATATG
TGTTTTGTGTGGGCGGTTATGTTAACCATAAAACTCCAAGAGGAGAAGAG
TGCCCACCCAGCATGTGTGAAGCCCTAAGCTATGTGGAATGATAATGTGG
AACCCGGTACCACAAAATTAAAAGAGGAAACGTTTCATTCTTGGTGCTTG
CACGTGGACACACACAGGGCAGGCACACCTTCTCCCTTGATGGTCAGTCT
TGTTGCTCCGTTTATGCTGCCATATTTATTTATAACTTCTGTCACTTTGG
GAATTGTCTCAGAGCTACCTGAAAAACACATAAGGATGACAGTGATATAA
TCAAGATCTTCATTCCAAGCATCACATTTCCCATTCATGTTGTAAGATGC
GAATGAATCTTGACTAATGCCCAAACGGGGAATTAAGTACTTAACCAACA
CTCACTAGCTTTGTGTGAAGAACTTTCCGGTATTTATCCAAGAACAACGT
TAACATAATGGCCTCCACCACTCGTATCTACCATATTATATCCCACCTGT
TAACCCCTAGCTCTTCCGTCTTGCTCCTCCTAGTTACCAATTCCTAACTT
GTCACCACCTCCTTTATCCACTTTCCTTTTCCCACCCTGTCTCGCCATAA
CCACCTATTTTATTATCTCACCCATTGCATTCTATACTGGCTTACTTATC
CCCTTCCTTTTTCTTTTTG
NCCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTAGCTCTATACCCCAT
TTTTTGATTGGGTTGTTTGGCTTTTTTGGAGCTTAGCTTCCTGAGTTCTT
TATATATTTTGGATATTAGCCCTCTATCAGATCTGGAGCTAGTAAAGAAT
TTTTCCCAATCTGTAGGTTGCTGATTTGTCCTATTGACTATGTCCTTAGC
CTTACAGACACTTTCCAGTTTCATGAGGTCCTATTTATCAATTCTTGGTC
TTAGAGCATGAGCCATTGGAGTTCTGTTTAGGATATTTTCCCCCTGTACC
AATGAGTTCAAGGCTCTTTCCCAGACACATTCTCTTCTATGAGATTCAGT
GTATCTGGTTTATGTTGAGGTCCTTTATCTACTTGAACTTGAGCTCTGGA
CTGGGTGAAAAATATGGATCTACTTTCATTGTTCTACATACTGAGTGCCA
GTTCGAGCCCCTTTATCTATTGTAGATGCTTTCTCTTTTTTCCATTTTAT
ATTTTCCGACTCTCTCCGTGAAAGATCCACGCGTGCGATTTCCTGTTTTG
TTTCCTTTCTTTTCTATTTCTTTTCGCTTTACCCTGCGCTTCCCCTCGCT
TCCTTTATTTCTTCTTTTCTATTCCTTCTTCGCCTTTTGTCCCACTTTTC
TTTTCCCGTGCTCATTTGTTTAGTTTTTTCCTCTCCCTTTTACCCTANTT
TTGCCGCNTTGGATGGGGTTGGTGGTTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_j02.b1 MSMg01no464_j02.b1 CHROMAT_FILE:
MSMg01no464_j02.b1 PHD_FILE: MSMg01no464_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:23 2005
         (287 letters)



>mm_chr15_44290742_44291428
          Length = 687

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagactattccagtgatatgtgttttgtgtgggcggttatgttaaccataaaactcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 caaagactattccagtgatatgtgttttgtgtgggcggttatgttaaccataaaactcca 428

                                                                       
Query: 61  agaggagaagagtgcccacccagcatgtgtgaagccctaagctatgtggaatgataatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 427 agaggagaagagtgcccacccagcatgtgtgaagccctaagctatgtggaacgataatgt 368

                                                                       
Query: 121 ggaacccggtaccacaaaattaaaagaggaaacgtttcattcttggtgcttgcacgtgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggaacccggtaccacaaaattaaaagaggaaacgtttcattcttggtgcttgcacgtgga 308

                                                                       
Query: 181 cacacacagggcaggcacaccttctcccttgatggtcagtcttgttgctccgtttatgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cacacacagggcaggcacaccttctcccttgatggtcagtcttgttgctccgtttatgct 248

                                                          
Query: 241 gccatatttatttataacttctgtcactttgggaattgtctcagagc 287
           ||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 247 gccatatttaggtataacttctgtcactttgggaattgtctcagagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)