BAC Information

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BAC

Clone NameMSMg01-464L04
Chromosome15 (Build37)
Map Location 57,188,853 - 57,371,544
singlet/doubletdoublet
Overlap geneBC026439
Upstream geneHas2, EG594843, LOC435442, LOC100040067, LOC100039984
Downstream geneZhx2, Derl1, Wdr67, BC030396, 9130401M01Rik, Zhx1, Atad2, LOC665244, 2410187C16Rik, Fbxo32, 8230402K04Rik, Anxa13, LOC100040231, D15Ertd621e, EG631797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464L04.T7 (MSMg01no464_l04.b1)MSMg01-464L04.TJ (MSMg01no464_l04.g1)
ACCAG549051AG549052
length771761
length of high quality
(start - end)
169 (77 - 245)490 (78 - 567)
definitionCHROMAT_FILE: MSMg01no464_l04.b1 PHD_FILE: MSMg01no464_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:33 2005CHROMAT_FILE: MSMg01no464_l04.g1 PHD_FILE: MSMg01no464_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,188,853 - 57,189,017)(57,371,055 - 57,371,544)
sequence
GATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAGGCGC
GGAATTCTAATCTTTGCCCATGAGCAATTATGGGTGCTACTTTCAAAGAC
GGTCTGGTCTGAGTTCTACTGTGCCAAAGGCACACTCACTATACCCTGTC
TCAGGTGAGAGGTATTATTTTAGCTGTGCTAAGTACATTTAGAGAGTAAC
TCCAGCATCTTCAGATTGATAGATTTCTTTTGCAATTAGCCNNAAGGGCC
TAGGNAAATGGTTATGGTTTTTTAATTAGAATCAATCAAATAGTCTCAGT
TGGAAGAACTGAATGGAAAAATTCCAAACTTTTTTTTTCTTCTCATGGGA
GTAAAACTCCCGGGGAAAATCCCAAAAAAACACGGGGGAACTTTGTGGGG
GGGGTTTCTTCGGGNNNNCCCCCCNCAAAGCAAAAAACCCCTCAAAAAAC
NCCCCTTTTTTTCTCTTNGCCTCTTTGTCGTAANNNNNNGTGTGAGTATT
GGCCTGCNNNNNNNNNNNAAGGGAAGTTGGGNGTCGTTAGTGTAANNNTG
NNNTNNTTGGAANNATATGACNNNAGCGGGTGCGGGCGTGTGCTTTTNNN
CTAGCGAGTTTATCCTAATAAAATAAGGCGGTGTGTGTTTCCNTTTNGCG
CTGTTGTTTCCNNNTTCGATGAATTTGCCCCTACANAAACACCCTCCTNA
TCACAACATATCCCCTTCCCCCGGTGTTTCTTCTCCCTTCTCCCCTCCGC
CTCATCGCGCTACTGTTTTCC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTAGAGCCAAGAGAGCCACATG
GGGGTATTCATTCAACTTCCCGGCCTAATCACTTAGACAGGGGAATCCCG
GCCTTCTCAGGAAATGAAAGCACATTAGAGGCCCATCTTGCCCTTTGGGC
TCTAATCTTGCTTCTGAGACTAAGGGACTGAAGATGTGACATTGAAGGTT
CCTAAGGCCTACGCATATGGCATTTGAAGCTCTAGAGAAATTAATGGGTA
CACTATTTGCTGAAAAGCCTCTTATTTACATAATAGCTGCATTGTCCCGT
AAGCCAGAACATGTGAAGAGGCATGCTAAGAGGCATGGACGTTATGGATC
ACGCTAAGAGGTATGTAACACTAAACATATTGACAAGCCATTTAGACAAG
GAAGGTCAAGGTAAGACTTGAATTTGAAAAAGAGCCGCTGTTGTGTAGGG
TGGAAGATGGCCTCAAAAGGGTTGAAATAAGAAGCAGAATGATCAAAGCT
GATACTCTAGCAAGGTGGTCACAAGTAACTTGAAAAGAAGTAGAGACATG
AGAGTTGGGGTCAGAAAAGATGGCACATGGTAACTGACTATCTACCATGG
CCAAAGTAAGGAAGTCTAGGGAAAATTCCAGATTTCCGCATCCCAAAGAA
GAGGGGCCTACACCCAGGGACATAAAAAAATGGGAAAGCCCCCTGGAACA
GGTGGCAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_l04.b1 MSMg01no464_l04.b1 CHROMAT_FILE:
MSMg01no464_l04.b1 PHD_FILE: MSMg01no464_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:33 2005
         (169 letters)



>mm_chr15_57188653_57189221
          Length = 569

 Score =  296 bits (153), Expect = 5e-85
 Identities = 162/165 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatgggtgctactttcaaagacggtctggtctgagttctactgtgccaaaggcacact 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attatgggtactactttcaaagacggtctggtctgagttctactgtgccaaaggcacact 260

                                                                       
Query: 61  cactataccctgtctcaggtgagaggtattattttagctgtgctaagtacatttagagag 120
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 cactacaccctgtctcaggtgagaggcattattttagctgtgctaagtacatttagagag 320

                                                        
Query: 121 taactccagcatcttcagattgatagatttcttttgcaattagcc 165
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactccagcatcttcagattgatagatttcttttgcaattagcc 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no464_l04.g1 MSMg01no464_l04.g1 CHROMAT_FILE:
MSMg01no464_l04.g1 PHD_FILE: MSMg01no464_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:33 2005
         (490 letters)



>mm_chr15_57370855_57371744
          Length = 890

 Score =  932 bits (482), Expect = 0.0
 Identities = 488/490 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actagagccaagagagccacatgggggtattcattcaacttcccggcctaatcacttaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 actagagccaagagagccacatgggggtattcattcaacttcccggcctaatcacttaga 631

                                                                       
Query: 61  caggggaatcccggccttctcaggaaatgaaagcacattagaggcccatcttgccctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 caggggaatcccggccttctcaggaaatgaaagcacattagaggcccatcttgccctttg 571

                                                                       
Query: 121 ggctctaatcttgcttctgagactaagggactgaagatgtgacattgaaggttcctaagg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 570 ggctctaatcttgcttctgagactaaggggctgaagatgtgacattgaaggttcctaagg 511

                                                                       
Query: 181 cctacgcatatggcatttgaagctctagagaaattaatgggtacactatttgctgaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cctacgcatatggcatttgaagctctagagaaattaatgggtacactatttgctgaaaag 451

                                                                       
Query: 241 cctcttatttacataatagctgcattgtcccgtaagccagaacatgtgaagaggcatgct 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 450 cctcttatttacataatagctgcattgtcccataagccagaacatgtgaagaggcatgct 391

                                                                       
Query: 301 aagaggcatggacgttatggatcacgctaagaggtatgtaacactaaacatattgacaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aagaggcatggacgttatggatcacgctaagaggtatgtaacactaaacatattgacaag 331

                                                                       
Query: 361 ccatttagacaaggaaggtcaaggtaagacttgaatttgaaaaagagccgctgttgtgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ccatttagacaaggaaggtcaaggtaagacttgaatttgaaaaagagccgctgttgtgta 271

                                                                       
Query: 421 gggtggaagatggcctcaaaagggttgaaataagaagcagaatgatcaaagctgatactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gggtggaagatggcctcaaaagggttgaaataagaagcagaatgatcaaagctgatactc 211

                     
Query: 481 tagcaaggtg 490
           ||||||||||
Sbjct: 210 tagcaaggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)