Query= MSMg01no464_n05.b1 MSMg01no464_n05.b1 CHROMAT_FILE:
MSMg01no464_n05.b1 PHD_FILE: MSMg01no464_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:43 2005
(247 letters)
>mm_chr15_5978454_5979101
Length = 648
Score = 464 bits (240), Expect = e-135
Identities = 246/248 (99%), Gaps = 1/248 (0%)
Strand = Plus / Minus
Query: 1 aggacacagtatttagcatcctggcaaagactacagttaggctg-aaaaaaaaaatcagt 59
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 448 aggacacagtatttagcatcctggcaaagactacagttaggctgaaaaaaaaaaatcagt 389
Query: 60 ctttagaagcttggaaaaagatgatcacaaaattcacaagtaaaaaggcctgagtttctt 119
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 388 ctttagaagcttggaaaaagatgatcacaaaattcacaagtaaaaatgcctgagtttctt 329
Query: 120 tggcatttagccaaggcaataataaagcagctggagtatatattcatgttagaatgcata 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tggcatttagccaaggcaataataaagcagctggagtatatattcatgttagaatgcata 269
Query: 180 tactacaaggggccaggatattcacatcatgtgttccacaggtaaaccaggagggatact 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tactacaaggggccaggatattcacatcatgtgttccacaggtaaaccaggagggatact 209
Query: 240 tcactcac 247
||||||||
Sbjct: 208 tcactcac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 648
Length adjustment: 9
Effective length of query: 238
Effective length of database: 639
Effective search space: 152082
Effective search space used: 152082
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no464_n05.g1 MSMg01no464_n05.g1 CHROMAT_FILE:
MSMg01no464_n05.g1 PHD_FILE: MSMg01no464_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:43 2005
(395 letters)
>mm_chr15_5857516_5858306
Length = 791
Score = 601 bits (311), Expect = e-176
Identities = 368/389 (94%), Gaps = 4/389 (1%)
Strand = Plus / Plus
Query: 7 acagagcaagaatatccacttaggtggcttttggtcatcccagtacctcaatgcaactct 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 acagagcaagaatatccacttaggtggcttttggtcatcccagtacctcaatgcaactct 266
Query: 67 tagatctctcaggatatcttgcttcaatagtcttgctgtcattgatatgtgataatattg 126
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 267 tagatctctcaggatatcttgcttcactagtcttgctgtcattgagatgtgataatattg 326
Query: 127 ggcaggactactgatagtttctctcccttgcaggttgtgtggctactgctgataccaaga 186
||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 327 ggcaggactactgatagcttctctcccttgcaggttgtgtggctactgctcatactaaga 386
Query: 187 actagaacccacaagggggggggggcttcctcataaggtccaagtcaatgcctccaagtt 246
|||||||| |||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 387 actagaacacaca----gaggggggcttcctcataacgtccaagtcaatgcctccaagtc 442
Query: 247 ttgtgcctgaattatgtggtttattaactcttgtatttctggaaggctccaagggtcaca 306
||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||
Sbjct: 443 ctgtgcctgaattatgtggtttcttaactcttgtatttctgaaaggcaccaagggtcaca 502
Query: 307 agagcctattttgtttaagagttcgcctggactcccctgaccagcaactcaaatggaagt 366
|||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 503 agagcctattttgtttgagagttctcctgtactcccctgaccagcaactcaaatggaagt 562
Query: 367 ctttttatgcttagcactgagtatttttg 395
||||||||||||||||||||||||||||
Sbjct: 563 ttttttatgcttagcactgagtatttttg 591
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 791
Length adjustment: 9
Effective length of query: 386
Effective length of database: 782
Effective search space: 301852
Effective search space used: 301852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
