Query= MSMg01no464_o20.b1 MSMg01no464_o20.b1 CHROMAT_FILE:
MSMg01no464_o20.b1 PHD_FILE: MSMg01no464_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:50 2005
(145 letters)
>mm_chr15_27521563_27522107
Length = 545
Score = 190 bits (98), Expect = 4e-53
Identities = 131/146 (89%), Gaps = 10/146 (6%)
Strand = Plus / Plus
Query: 1 ggggtcagggccatggaggtcaggagaaaagggtgaaaatgttgaagaccataagtaaag 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggggtcggggccatggaggtcaggagaaaagggtgaaaatgttgaagaccataagtaaag 260
Query: 61 agcagggggcta-aaaggaaactttagaaaactagttaagagggggtaaagctcattgca 119
|||| |||||| ||||||||||| ||||||||||||||| ||||||||||||| ||
Sbjct: 261 ggcagagggctataaaggaaacttcagaaaactagttaag-gggggtaaagctc----ca 315
Query: 120 gtgtttgcactggagactgacccagt 145
|| |||||||||||||||||||
Sbjct: 316 ctg----cactggagactgacccagt 337
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space: 73569
Effective search space used: 73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no464_o20.g1 MSMg01no464_o20.g1 CHROMAT_FILE:
MSMg01no464_o20.g1 PHD_FILE: MSMg01no464_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:50 2005
(485 letters)
>mm_chr15_27729428_27730312
Length = 885
Score = 907 bits (469), Expect = 0.0
Identities = 481/485 (99%)
Strand = Plus / Minus
Query: 1 ttgctgtccacagggcatctagatactgccttaagtccctgctgtgggaattatgggtat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 502 ttgctgtccacagggcatctagatactgccttaagtccctgctgtgggaattatgggtgt 443
Query: 61 tagtccagaagtggaattactggacagcaagctactaaacagtgtcttccctcaggtgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tagtccagaagtggaattactggacagcaagctactaaacagtgtcttccctcaggtgtg 383
Query: 121 ttttgaaatctaatcccgatcatgttagtcttagcaggtggggctagggcagggctctcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttttgaaatctaatcccgatcatgttagtcttagcaggtggggctagggcagggctctcg 323
Query: 181 ggagcagaatcagtgtccttaggaaggagccctaggaaccctttgtccttccaccaagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggagcagaatcagtgtccttaggaaggagccctaggaaccctttgtccttccaccaagca 263
Query: 241 agaacagatttctcatctctaagagacagaccttaccaaacactgagtctgctagcacct 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agaacagaggcctcatctctaagagacagaccttaccaaacactgagtctgctagcacct 203
Query: 301 tgatcatggatgtgggctgtctttaaataccccgttttaagacatgttgttgcagcagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgatcatggatgtgggctgtctttaaataccccgttttaagacatgttgttgcagcagta 143
Query: 361 ggaataaacagagagttacagtaatcccagaatgtcatatatgccttgttggttttatgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ggaataaacagagagttacagtaatcccagaatgtcatatatgccttgttggttttatgt 83
Query: 421 cagcaacgtacttcaaatagattctcttttctctctctctgctattacctgttgcacaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 cagcaacgtacttcaaatagattctcttttctctctctctgctattacctgttgcacaaa 23
Query: 481 ggtac 485
|||||
Sbjct: 22 ggtac 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
