XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTACAAATT
GCACTTTGTTTCTGTAGTTGCCTGATGAGAGAGAGACACATTAGCTGTTT
GCTGTTCTGGGCTATTCTGAATGAATGAATCGGGTTTCCATGGTGAAAGA
GGGTGAAGTGGATGTTGGGTGAGTAAACACGTTTTTCCACCGTGCTCTGA
GTTCCCGTTAGAACTATGGGCAGATTCCCATCCGCCACACTGAGTCCTCA
CTTGCCTACCCCCCACCCCATGTGATGATGGTTCCTGTTGTCAATTGGAC
AAGATCTATTATCACCGTGGGTACATCTGTTCAGGATTGCCTAGAGTAGG
TTAATTGAGTAAGACTTGCCTTAAACGTGGGTGGCACCATAGTGACACAC
ATATATGGATCTGATGTGATAGTGGCAATGGAGGGAAACCTGGCACTGAA
CTAAAACAAACTTCTTCTTTTTGACTGGAGTTTCTTTTGCCCAGGCATTT
TAACATAACAGCAACAAGAGAAACTAAGTTATAAGCGAACCCTAATTCCA
TCTCTCTCTTTGCTTTCTGATTGAATGGAAACAGGACCAGTTTGTTCCTA
ATCCCGCCGCCCTGGCTCTTCCCCCGACAATGAACTTTTTTCCCTTGAAC
CCCTCTTTGGGCAAACCTTTTCCAATTGGGCCTCTCCGGGGTTTTCCCCC
CTCGTGATAAAACGGCCCCCCTTTCCTTGTTCCTCCCCTACCCGGGTATT
TTTCTCCTTTTTTTTTCCCTTATTCTTTTATG

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACAGAAGCCATGGATTCAGAGGGCTGCCTGTAGTGGT
GGACTCCGGGGATACAGCGAGACCACTCAAGAGGATCACGTGTCTGATTT
GTGTGACAGTCTGCACACACCAGATGTTGAATACAAAGAATGGTGACATT
GTTGGAATGCATAGATGGTTGTGAAGAAGATGGTCCCATGACGGACAGAA
ACCTGATTCCAAATCCCAGCTTCTCTGCCCAACGTGAGAGTGAGGTACAC
CCTGTGTTTCCTTGATCTGACCTCTCCTCCTCTGATAATTGCTGGAATTA
ATAGGTTTTATCAAGTTCACCAAATCCTGAAATCCTCACTAAGACCTCGT
ATCTGTAAGGAGAATCTAGACTGTTGTAAACACCAGCTTTGAAGGACACA
GCTAAAGCAATGCATATGCCCAGGTCTGACTCCGGCACCAGCACAGACCT
AGTCATTCATCTATGAGATAGAACTATTCNCAGCTGCCTCAGCATGTTCA
CAGGCACACACAGGGGTCCCTAAAAAGAACCTCTGTTCCCTTCTCATGAA
TTTCCCCTGAAAAGGTGGCAAGAAGTGGCACCCCCACTTTAATACCCCAC
CAAGTCGCAACTGGTGGTTGGTGTTTGCTCCCCCCTTAAAAATTCACCAT
GACGGGGCAAAAAAAATTTTTCCCCTTCCCCCTCTCCCTTTTAGCCCTAA
TAACTTTTTTATTACGATGTCTTCCCCTCCCCCCCCATACGGGTGTGTGC
G

Query= MSMg01no465_h18.b1 MSMg01no465_h18.b1 CHROMAT_FILE:
MSMg01no465_h18.b1 PHD_FILE: MSMg01no465_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:36 2005
         (249 letters)



>mm_chr15_59514420_59515068
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtttctgtagttgcctgatgagagagagacacattagctgtttgctgttctgggctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtttctgtagttgcctgatgagagagagacacattagctgtttgctgttctgggctat 260

                                                                       
Query: 61  tctgaatgaatgaatcgggtttccatggtgaaagagggtgaagtggatgttgggtgagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 tctgaatgaatgaatcgggtttccatggtgaaagagggtgaagtggatgttgggtgagtg 320

                                                                       
Query: 121 aacacgtttttccaccgtgctctgagttcccgttagaactatgggcagattcccatccgc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacacgtttgtccaccgtgctctgagttcccgttagaactatgggcagattcccatccgc 380

                                                                       
Query: 181 cacactgagtcctcacttgcctaccccccaccccatgtgatgatggttcctgttgtcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacactgagtcctcacttgcctaccccccaccccatgtgatgatggttcctgttgtcaat 440

                    
Query: 241 tggacaaga 249
           |||||||||
Sbjct: 441 tggacaaga 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no465_h18.g1 MSMg01no465_h18.g1 CHROMAT_FILE:
MSMg01no465_h18.g1 PHD_FILE: MSMg01no465_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:36 2005
         (438 letters)



>mm_chr15_59693827_59694664
          Length = 838

 Score =  785 bits (406), Expect = 0.0
 Identities = 430/438 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaagccatggattcagagggctgcctgtagtggtggactccggggatacagcgagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 acagaagccatggattcagagggctgcctgtagtggtggactccggggatacagcgagac 579

                                                                       
Query: 61  cactcaagaggatcacgtgtctgatttgtgtgacagtctgcacacaccagatgttgaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cactcaagaggatcacgtgtctgatttgtgtgacagtctgcacacaccagatgttgaata 519

                                                                       
Query: 121 caaagaatggtgacattgttggaatgcatagatggttgtgaagaagatggtcccatgacg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  
Sbjct: 518 caaagaatggtgacattgttggaatgcatagatggttgtaaagaagatggtcccatgata 459

                                                                       
Query: 181 gacagaaacctgattccaaatcccagcttctctgcccaacgtgagagtgaggtacaccct 240
           |||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||
Sbjct: 458 gacagaaacctgattccaaatcccagcttctccgcccaatgtgagactgaggtacaccct 399

                                                                       
Query: 241 gtgtttccttgatctgacctctcctcctctgataattgctggaattaataggttttatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtgtttccttgatctgacctctcctcctctgataattgctggaattaataggttttatca 339

                                                                       
Query: 301 agttcaccaaatcctgaaatcctcactaagacctcgtatctgtaaggagaatctagactg 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 atttcaccaaatcctgaaatcctcactaagacctcgtatctgtaaggagaatctagactg 279

                                                                       
Query: 361 ttgtaaacaccagctttgaaggacacagctaaagcaatgcatatgcccaggtctgactcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 278 ttgtaaacaccagctttgaaggacacagctaaagcaatgcatatgcccaggtctgactct 219

                             
Query: 421 ggcaccagcacagaccta 438
           ||||||||||||||||||
Sbjct: 218 ggcaccagcacagaccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)