BAC Information

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BAC

Clone NameMSMg01-465K24
Chromosome15 (Build37)
Map Location 92,306,562 - 92,306,873
singlet/doubletsinglet
Overlap genePdzrn4
Upstream geneSlc2a13, Lrrk2, Muc19, Smgc, LOC100042529, Cntn1
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465K24.T7 (MSMg01no465_k24.b1)MSMg01-465K24.TJ (MSMg01no465_k24.g1)
ACCAG549809AG549810
length793819
length of high quality
(start - end)
308 (112 - 419)290 (67 - 356)
definitionCHROMAT_FILE: MSMg01no465_k24.b1 PHD_FILE: MSMg01no465_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:53 2005CHROMAT_FILE: MSMg01no465_k24.g1 PHD_FILE: MSMg01no465_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGTGCGCTATACGACTCACTATTTTCAGAGGATCCGCGGAATTCCAGA
GTTCTTTCCCCAGCAACTGCATGGTGGCTCACAACCATCTGTAATGGGAT
CCAATGTATGTTTCAGGTATATCTGAAGACAGGGACAGTGTACTCACATA
TAAAATAATCAAATAAATCTTGGGGCCTAGCAAACACATAAGTGGATGCT
CACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAG
AAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCAACATTA
TGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAA
AAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACAGGCA
AACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGTAGT
GGGTGGATAGGCAAATCCCTTTTTTCCCTTCCTTCTTTCTTCCTTTTTCC
ACTTTTTTTTTTTTTCTTTCATTTCCTCTCTCTACCTTTTCTCTCCTCTC
CTCCCCCCTCTTTTTTTTTTTTTTTATACTTCACTCCCAATTTTTTTCTA
CTTCTTTTTTCTCCATCTCCTTTTCCTCTTCCCCTTTTTTCTTTTTTCTC
CTCTCTTATCGCTTCTTCTTTTTTTACTATTTCATTTTTTTTTTTCTTCT
TTTTTTTCTCTCCCTTCCTTCTCTCTTTTCTATATTTTCCTATCCCACCT
TCTATCTCCCTATATACCTTCCTCTTATTTCTTTTCTTCCCCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATGAGCATGCAAGCATACAAAGATCCCCTTTTAT
GTTGGTTAGAACTGCTTGGCCTAAACAGAACTGGTTTCCACAGCAAGATT
ACCTCAAAAAGAGACAGAATATTGGAAAGAATAATTTGTCTTGTGAATAA
AATATTACAGCTTGCTAGGATACTGTGGGGGAAGAGCTGCTTTTTTTCTT
TTTTTCTTTTTTTTTTTAATAAAGATTTCCTTTTATCTTAAGAGATATTT
TTGCCCCTTCTTCTCTTGATCAAAAATTGACACAGATTACTTAGCAATGC
TATAAAGCCTGGCATGCNCAAGCTGTGATAATGGAACTGTCAATGCTGTT
AATATGCACTTACGTCCTTGAATATGGCATTTGCCCATTGTACTAAGATC
CTGTTCTAATCCTCTTTGCCGCTTGGATATTTTAACGACCCCCCTCTCTA
AATTTCCCTTTTTTTCTTATTTCTTACGGCTCTTATTCATATTTTCTTCT
TTCCCTCACCCCTACTCGTTTTTCTTTCTTTTTTTCATCCTTTTACCTCC
TCTTTTCTTTTCCTCTCCTCCTCCCCCTATCTTCTTCTTCTTCTATCCTC
TTTACTAAACAATCACCACTTGTCCTTTTATATTTCCAACTTCCCAACTT
TTTTCTATCTTTCTTCTCACGTGTTTTTTTCTTTTTTTATTCTTTTATTT
TTTTTTTATCTTCCCTCCTCTTTTTCCCTCTTCACTTTTCTCCTCTTTTT
TTTTCCTTCTCTTCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_k24.g1 MSMg01no465_k24.g1 CHROMAT_FILE:
MSMg01no465_k24.g1 PHD_FILE: MSMg01no465_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:54 2005
         (290 letters)



>mm_chr15_92306522_92307211
          Length = 690

 Score =  476 bits (246), Expect = e-139
 Identities = 286/312 (91%), Gaps = 22/312 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagcatgcaagcatacaaagatccccttttatgttggttagaactgcttggcctaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 atgagcatgcaagcatacaaagatccccttttatgttggttagaactgcttggcctaaac 293

                                                                       
Query: 61  agaactggtttccacagcaagattacctcaaaaagagacagaatattggaaagaataatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agaactggtttccacagcaagattacctcaaaaagagacagaatattggaaagaataatt 233

                                                                       
Query: 121 tgtcttgtgaataaaatattacagcttgc--------------taggatactgtggggga 166
           |||||||||||||||||||||||||||||              |||||||||||||||||
Sbjct: 232 tgtcttgtgaataaaatattacagcttgctagtgtcttcaatataggatactgtggggga 173

                                                                       
Query: 167 agagctgctttttttctttttttct-------tttttttttt-aataaagatttcctttt 218
           ||||| |||||||||||||||||||       |||||||||| |||||||||||||||||
Sbjct: 172 agagccgctttttttctttttttctttttttcttttttttttaaataaagatttcctttt 113

                                                                       
Query: 219 atcttaagagatatttttgccccttcttctcttgatcaaaaattgacacagattacttag 278
           |||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||
Sbjct: 112 atcttaagagatatttttgccccttcttctcaagagcaaaaattgacacagattacttag 53

                       
Query: 279 caatgctataaa 290
           ||||||||||||
Sbjct: 52  caatgctataaa 41


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)