BAC Information

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BAC

Clone NameMSMg01-465M05
Chromosome15 (Build37)
Map Location 69,973,690 - 70,189,682
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383050
Downstream geneLOC383051
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465M05.T7 (MSMg01no465_m05.b1)MSMg01-465M05.TJ (MSMg01no465_m05.g1)
ACCAG549867AG549868
length745743
length of high quality
(start - end)		244 (64 - 307)459 (72 - 530)
definitionCHROMAT_FILE: MSMg01no465_m05.b1 PHD_FILE: MSMg01no465_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:00 2005CHROMAT_FILE: MSMg01no465_m05.g1 PHD_FILE: MSMg01no465_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,189,439 - 70,189,682)(69,973,690 - 69,974,147)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAGGATCCGCGGAATTCA
TCTTTTTCCAAAGTCTATTTAGCTAGCTTGGTCCTAGAATCTCTTGTTTC
TGCCTTCTGAATGCTAGAATTATTGATAGGCTGTCATATATCTCTGGGTT
TCCATGAGTTCTGGGTGTCTGGAATCCTTGTGTTCATATTGTGTGGCAGG
TGCTTTAACCATGGAGATATCTGCTAACCTTTGTTGTTTTAATCAACTAA
AATGGAAAAAGCTATAGAATGTAGAGATTAAGATGAATAGGCTGTGTTTC
CCAAATATTGTGGTTTAAATATTTCTAATGCCATGTGATTATCTCCTGAT
TATAATAGGAATCTCTTCCTGTAAAAAGATGTGATGTAGGTACTTTTATT
TTGAATCTGAGCATACAGTGACTAAGCTTGGCATGGCTGTATTAAATAGC
ATGGTTGTTACTAAAAGACAATGAAGTCCATCTTCGATCTCTTTGGATGT
TTTGTCGAAGACAGCAGAAGCTCCTATTTCCTACTTTGAGAAATCCCCTT
CAGAATCCATTAACAGGTTAACAGAAGCCTAAAAACACAACTGGAAACAA
ATGTATGTACAGATGAATGACAACCCCCTCCGAAAGAATCATTTCTCTCT
TGTTTGAATAACAACCCCCCCTCCTCCAAAACAAAGAAAGAACCTTTAAT
TCCCTCCAAGGAGGAATTACAAGCCTCTCTCTACCAAACATATTC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCAATGTTAAAGGTGTGAACATTCACAA
TGCTAGAGCTGCTCTTCTCCAACACTATTCCAAAGAGCTTCAGAGGAGAA
TGATGAACTTCCTAATCACATGGCTCTTTTCTTCTAGCAAAGGAGAGTTT
TGTTGTGCGTTAATTGTCAAATTGACAGAGCCAACCACATCTAAGAGGAA
ATGCTGAATTGTGGAACTGCCTAGGTCAGATTGGCCTTTTGGCATGTGCC
TAACTGATGTTGTATGGGCCCTGCCTTTTTTAGGTGATGCTGTCTGTCTT
AGTTAGGGTTTTGTTGCTCTGAAGAGACATCATGACCAAAGGAACTCATA
AAGGAAACATTTCATTGGAGCTGGCTTATAATCTCAGAGACTTAGTTCAT
TGACATCATGATGGGAATTGATGCAGACACACACAGACATGGTCTCAGAG
AAGGGGCTGAGAGTTCTATTCTTGAGTCACATGTAGCAAGGAGGATACAC
ACTTCCACACTGGGTAGGGTTTGAGTATATAAAACTTTTTTAGTCTGTCC
TGGCTGGAACACATTTCCCTCCATCAAAAGCCTTTCTACTTCTTAACAGG
CCTTATTTCCCACAAGGCGCACTCTCTCTGGGGCTCCCTCTGATTACTTA
GATTCTCATCGCGAGCTCCTCTTTTTTTATATTCCTCTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_m05.b1 MSMg01no465_m05.b1 CHROMAT_FILE:
MSMg01no465_m05.b1 PHD_FILE: MSMg01no465_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:00 2005
         (244 letters)



>mm_chr15_70189239_70189882
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatttagctagcttggtcctagaatctcttgtttctgccttctgaatgctagaattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctatttagctagcttggtcctagaatctcttgtttctgccttctgaatgctagaattat 385

                                                                       
Query: 61  tgataggctgtcatatatctctgggtttccatgagttctgggtgtctggaatccttgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgataggctgtcatatatctctgggtttccatgagttctgggtgtctggaatccttgtgt 325

                                                                       
Query: 121 tcatattgtgtggcaggtgctttaaccatggagatatctgctaacctttgttgttttaat 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 tcatattgtgtggcaggtgatttaaccatggagatatctgctaacctttgttgttttaac 265

                                                                       
Query: 181 caactaaaatggaaaaagctatagaatgtagagattaagatgaataggctgtgtttccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caactaaaatggaaaaagctatagaatgtagagattaagatgaataggctgtgtttccca 205

               
Query: 241 aata 244
           ||||
Sbjct: 204 aata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no465_m05.g1 MSMg01no465_m05.g1 CHROMAT_FILE:
MSMg01no465_m05.g1 PHD_FILE: MSMg01no465_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:00 2005
         (459 letters)



>mm_chr15_69973489_69974347
          Length = 859

 Score =  839 bits (434), Expect = 0.0
 Identities = 452/458 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   ccaatgttaaaggtgtgaacattcacaatgctagagctgctcttctccaacactattcca 61
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ccaatgttaaaggcgtgaacattcacaatgctagagctgctcttctccaacactattcca 261

                                                                       
Query: 62  aagagcttcagaggagaatgatgaacttcctaatcacatggctcttttcttctagcaaag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aagagcttcagaggagaatgatgaacttcctaatcacatggctcttttcttctagcaaag 321

                                                                       
Query: 122 gagagttttgttgtgcgttaattgtcaaattgacagagccaaccacatctaagaggaaat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gagagttttgttgtgcgttaattgtcaaattgacagagccaaccacatctaagaggaaat 381

                                                                       
Query: 182 gctgaattgtggaactgcctaggtcagattggccttttggcatgtgcctaactgatgttg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gctgaattgtggaactgcctaggtcagattggccttttggcatgtgcctaactgatgttg 441

                                                                       
Query: 242 tatgggccctgccttttttaggtgatgctgtctgtcttagttagggttttgttgctctga 301
            | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 442 gaagggccctgccttttttaggtgatgctgtctgtcttagttagggttttgctgctctga 501

                                                                       
Query: 302 agagacatcatgaccaaaggaactcataaaggaaacatttcattggagctggcttataat 361
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agagacatcgtgaccaaaggaactcataaaggaaacatttcattggagctggcttataat 561

                                                                       
Query: 362 ctcagagacttagttcattgacatcatgatgggaattgatgcagacacacacagacatgg 421
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctcagagacttagttcgttgacatcatgatgggaattgatgcagacacacacagacatgg 621

                                                 
Query: 422 tctcagagaaggggctgagagttctattcttgagtcac 459
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tctcagagaaggggctgagagttctattcttgagtcac 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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