BAC Information

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BAC

Clone NameMSMg01-466J05
Chromosome15 (Build37)
Map Location 36,091,218 - 36,091,614
singlet/doubletsinglet
Overlap geneFbxo43
Upstream geneOsr2, Vps13b, EG666183, Cox6c, Rgs22
Downstream gene1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz, Zfp706
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466J05.T7 (MSMg01no466_j05.b1)MSMg01-466J05.TJ (MSMg01no466_j05.g1)
ACCAG550490AG550491
length746762
length of high quality
(start - end)
523 (80 - 602)397 (81 - 477)
definitionCHROMAT_FILE: MSMg01no466_j05.b1 PHD_FILE: MSMg01no466_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:06 2005CHROMAT_FILE: MSMg01no466_j05.g1 PHD_FILE: MSMg01no466_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAACTTTCCCAAACTGAATGGCTGAGAAGCACCTAAAA
AAAATGTCCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACACCCC
TGAGATTCCACCTCACATCAGTCAGAATGGCTAAGATCAAAACCTGAGGA
GACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTG
CTGGTGGGATTGCAAACTAGTACAACCACTCTGAAAATCAGTTTGGTGGT
TCCTCATAAAATTGGACATATTTCTACTGGAAGATCCAGCAATCCCACTC
CTGGGCATATACTCAGAAGATGCTCCAACATGTAATAAGGATACATGCTC
CACTATGTTCATAGCAGCCTTTTTTTTTTTTTAAGACAGGGTTTCTCTGT
ATAGCCCTAGCTGTCCTGGAACTCACTTTGTAGACCAGGTTCTCCTGGAA
CTCAGAAATCTGCCTGCCTCTGCTTCCCAAGTACTGGGATTAAAGGCGTG
CACCAGCACTACCTGAGCAGCCTTATTTATAGTAGCCAGAAGCTGGAAAG
AAACAAATGTCCCTCCACAGAGGAACGGATACCGAAAATGTCCTACATTT
ACACCATGGAGTACTACTCCGCTATTAAAAAACAATGAATTTGGGAAATT
CTTAGGCAAAAGGGATGGGACCTGGAGGAAATCTTTCCTGAGTGAG
CCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGAGGACAGGGACGAGGG
GAAAATTGCCAGACTGCAGCGTGTTCTCGCAGGACTGATTGGCAAGAAGA
TGGGCATAGAACAGCTGGATATCCTGACAGAATTACAGTATAGAAACTTG
AAGCACATCCTAGCTATGGTTTTAGAGTCCTTGACTTCGGAGAGTTTATA
CAGGTAAGGAATAAAAGTGGCTCATGAAAGAAAACTTTTATCATTTTTAA
AATTGGTGTTTTGTTGTGTTTCTGTCTTTGGTTGTCTTACACTATATCAG
AGGAAGCTTAAATGACCTCCCTGTGAGCCCTGTGATCCCTGATGGGATAG
GCTAGGCCTGTAATCTCTGATGGGACAGCTTGTGATCTTAGGTACTTGAG
AAGCTGAGGGAGAAGGATTGCTCAGATCCAAGGTCAGAAGAAAAAAAATC
AAAATGCCAGGCTTTATTTCAAAATTGCTTCTTGTTGTTGCTGCGGGTGC
TCATGGTGGTCCTATTCCTCAATACTATCCAACCCCCTGATTTTTGCATA
TTCCTGTTTTCCTCTCCCTATCCTTTTTCTTCTGGTTCTCTTCGCCTCTC
CTTTTGGTTTTGTTGCCCCCCTCCCCCCCATATTTGCCTTAGCCTTGTCT
CTTTTTGCCCACCCCAGCTGCTGATCTCGTCTCTACCCCTCTACCTTTAT
GTCTTCTACCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_j05.g1 MSMg01no466_j05.g1 CHROMAT_FILE:
MSMg01no466_j05.g1 PHD_FILE: MSMg01no466_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:07 2005
         (397 letters)



>mm_chr15_36091018_36091814
          Length = 797

 Score =  731 bits (378), Expect = 0.0
 Identities = 393/398 (98%), Gaps = 2/398 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgaggacagggacgaggggaaaattgccagactgcagcgtgttctcgcaggactgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tttgaggacagggacgaggggaaaattgccagactgcagcgtgttctcgcaggactgatt 538

                                                                       
Query: 61  ggcaagaagatgggcatagaacagctggatatcctgacagaattacagtatagaaacttg 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 537 ggcaagaagatgggcatagaacagctggatatcctgaccgaattacagtatagaaacttg 478

                                                                       
Query: 121 aagcacatcctagctatggttttagagtccttgacttcggagagtttatacaggtaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aagcacatcctagctatggttttagagtccttgacttcggagagtttatacaggtaagga 418

                                                                       
Query: 181 ataaaagtggctcatgaaagaaaacttttatcatttttaaaattggtgttttgttgtgtt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 417 ataaaagtggctcatgaaagaaaacttttatcattttttaaattggtgttttgttgtgtt 358

                                                                       
Query: 241 tctgtctttggttgtcttacactatatcagaggaagcttaaatgacctccct-gtgagcc 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 357 tctgtctttggttgtcttacactatatcagaggaagcttaaatgacctccctagt-agcc 299

                                                                       
Query: 300 ctgtgatccctgatgggataggctaggcctgtaatctctgatgggacagcttgtgatctt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 298 ctgtgatccctgatgggataggctaggcctgtaatctctgatgggacagcttgtgatctc 239

                                                 
Query: 360 aggtacttgagaagctgagggagaaggattgctcagat 397
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aggtacttgagaagctgagggagaaggattgctcagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)