BAC Information

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BAC

Clone NameMSMg01-467H05
Chromosome15 (Build37)
Map Location 102,820,963 - 102,821,199
singlet/doubletsinglet
Overlap geneHoxc8
Upstream geneKrt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060
Downstream geneHoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467H05.T7 (MSMg01no467_h05.b1)MSMg01-467H05.TJ (MSMg01no467_h05.g1)
ACCAG551156AG551157
length796765
length of high quality
(start - end)
233 (75 - 307)240 (73 - 312)
definitionCHROMAT_FILE: MSMg01no467_h05.b1 PHD_FILE: MSMg01no467_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:19 2005CHROMAT_FILE: MSMg01no467_h05.g1 PHD_FILE: MSMg01no467_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXCTACTTTCAGAAAAGCGCGGA
ANTCATGTCCTTACAGGACCAGTGGCCACCCCTTAGCTGATGAGACATCC
TGCTAGCCCTTCCTGTCATTGTTCTCTAAACACTTTTAAAATATTTATCT
TATATGTATAAATATTTTGCCTGAATATGTGTATGTATGTGTACCACATG
TGTGCCTGGTGCCCTTGGAGGCCAGAAAAGGGTGTCAGATCCCCTGAAAT
TGGAGGCCAGAAATTGAGCTTATGGATGGCTGTGAGCCACCATGTTGGTG
CTGGGACTTGATTTCTTTCTCTTTGCAAGCAGTAAGTGCTCTAATCACTG
AACAATCTCTCCAGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTG
CATCCTCATTTCCTCCCTCCCCCTTTTTTCCTTCTACTCTTTCCTATTTC
TTCTATATTTTCTTTCTCTTCTCTCTTTTTCCTTTCTCATTTTTCTCCCT
ACTCTTTTTTCCTTTTCTTCCACTTCTTTTTCCTTTTTTTCTTCATTCTT
CCCCTTCTTTCCTTCCTTTCTTATATCTTCTTTTCCTCTTCCTTCTCTCT
CCCTTTTTATTCCTCCCCTTTTTCTCCTCTTCTTCTTTTCTTATTTTCCC
TTTTCCTACTTCCTTTTCCTTATTTATCTTTTTATTCTTCCTTACTCTTC
TTATTTTTACTTCTTCTCTTTATTTTCCTCTCCTTCCTTATTTTTCTTAC
TACTTTCCTCTTCTTTTTCTCCCTCTCTCTTCCACTTTCTCTTATT
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTGGGCTGTTAGAGGAAAGAGCTAAGT
GAGAGCGCGCGCTCTACCTACCGACAGTGAGCAGAGAGCTGCAGCCGCCC
GAGCCCGCAGCCGGCACCGCGCCCCCACCTGCCCAGCCCCCAGCCCAGCA
GTCCAGCCCGGGGGAGCCGGCCAGCTTGGGGTTCGGTCCCGGGGGGAGGG
GAGTTTCGGGGATACCCGGCGGGGGAGCGTGATCCAAGGGGAGGGGGCCG
CGGGTTTTCTTTTTTTTTGCATGAGCTCCTACTTCGTCAACCCCCTGTTT
TCTTTTATACAAAGGCGGCGAGTCCCTGGAACCGGCCTATTACGACTGCC
GGTTCCCTCAGAGCGCGTGCAGAAGCCATGCGCTGTTGTATTGTTCCGTC
GGCTTCGCGCCCTGTTTTTATTACGCCCTTCATTACTTCTCATACTTTCT
TTCCCTACGTCATCTCCCTCATTCTTTACCTTGTTTCACCATTCTCACTC
CCGGTTCCTTTGAATTTCCACTTTTAATGCCTTTCTCCTCCTCTTTGGCT
ATTTTGTTCTTTTTCATACCGTTCCTCCTTCACTCTCTTTTCCATATCCT
CTCTCCCTCTTTCTGCATATATATCTTCTATTGTGCCCTGCCACCTTTCT
ACATCTTATTTCCAACCACTCCCTCTCCTTTCCTCTCTTTCTATCCTTTG
CTCCTCTCTCACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_h05.g1 MSMg01no467_h05.g1 CHROMAT_FILE:
MSMg01no467_h05.g1 PHD_FILE: MSMg01no467_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:20 2005
         (240 letters)



>mm_chr15_102820763_102821402
          Length = 640

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgggctgttagaggaaagagctaagtgagagcgcgcgctctacctaccgacagtgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgggctgttagaggaaagagctaagtgagagcgcgcgctctacctaccgacagtgagc 260

                                                                       
Query: 61  agagagctgcagccgcccgagcccgcagccggcaccgcgcccccacctgcccagccccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagagctgcagccgcccgagcccgcagccggcaccgcgcccccacctgcccagccccca 320

                                                                       
Query: 121 gcccagcagtccagcccgggggagccggccagcttggggttcggtcccggggggagggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccagcagtccagcccgggggagccggccagcttggggttcggtcccggggggagggga 380

                                                                    
Query: 181 gtttcggggatacccggcgggggagcgtgatccaaggggagggggccgcgggttttc 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttcggggatacccggcgggggagcgtgatccaaggggagggggccgcgggttttc 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)