BAC Information

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BAC

Clone NameMSMg01-467K06
Chromosome15 (Build37)
Map Location 72,649,356 - 72,649,598
singlet/doubletsinglet
Overlap gene1810044A24Rik
Upstream geneCol22a1, Kcnk9, LOC665621, Peg13
Downstream geneLOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467K06.T7 (MSMg01no467_k06.b1)MSMg01-467K06.TJ (MSMg01no467_k06.g1)
ACCAG551300AG551301
length754742
length of high quality
(start - end)
170 (74 - 243)243 (68 - 310)
definitionCHROMAT_FILE: MSMg01no467_k06.b1 PHD_FILE: MSMg01no467_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:34 2005CHROMAT_FILE: MSMg01no467_k06.g1 PHD_FILE: MSMg01no467_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAACATCCGCGGAT
TCCAGCCCTGTCTCACTTTGGTGATGAACAGCAATGTGGAAGTGTAAGCC
GAATATACCCTTTCCTCCCCACCTTGCTTCTTGGCCGTGATGTTTGTGCA
GGAGTATAAACCCTGACTAAGACCAAAGGGCTGTTATCAGGAAGGAAGAG
CCTGCTGGGGAAAGGCCCTGTGTCCCCTGCCTACAAGTCTGGTCATCTCT
TCTCCTTACCTCTGCAGTCACACAATGAGTGAAGGACTTGCTACTACAGG
CGTCCCTCCTGTCTTTTTTTTTCAACCTCCGCTTTCCCTTACCTTTCAGT
AGCTCTCAGAGTGGGCACCTGCCTCGCCTTTCTTGTATTCATATCCTGTG
CTGCTTCACTAGAGCCCCTACACTCTCTCTGTTGTCTCATCTCTTGCCGG
TATTATCTGCATCGCTTGTTCTTATGAAGTCAGTTCCCCAGCTCTGACAT
AGGTATTTGTCTACGTATCTTCTTTTGCACCCTTCATTATTTTTTCTGCC
CTTTCTTTTTTCTTTCCTTTTTGTAATTCTTTTTTCACTTACTCTCTCTA
TTTATTTCTTCCCTATTCTTTTTTTTCTTATTTTTCTTCCCTCTTTTTTC
TCTTTTCTCCTTATTCCCTCGTTTTCCTCTCTCGTTTTCCTTTTACATTC
TCTCTTTCATATTTCTTGCTCTCTACCTCCTTCTTCCCTTTATTTTCTCT
TATN
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCAGAAATTCTGGGTGATGAGAGTACTATAATAAATTAAAC
CTGATGTCATACACCAAGTGATGGGCAAGGGGCTGTGATGTGTGACTTTT
AATCTGCTGGGCTCCCAATCTCCACGAGAGCCATGGCTCCAGCTGCTGAG
AGGTAGGTAGTTCTTGTCCTGGCCTTACAATGCATTGTTAGAATGTCCTC
TTGAGCCCCACTCCTTTCTTTGCATATCACCAGCCAAGCCTCAAGCTGGT
CTGACTTGAGAGTCTTATTTTCTGTGCTGCTGCTTTTTTTTTTCCAGTTG
CTCATAAATAGTCTTCACCAACTTCTGTTTGTTTCTTAACCAGTCACTTG
TTCACAGAATGTTTACTGAGCAGCTATAGGTCATAATTTAAAAGTGGTGT
CCTGTGTACGACTATGTGTGGAACAGGTACATGGTTAAAGGAAAAGTGCC
GTGATTTGGTACACCTTACCCCTGGTTACTGTACCTTCATCTGTATCCGC
ACCATACTCTATCACCTTCATTCAGTGCGTGTTTATTGTTTTATTGAAAA
GTTGTTTGCTTCCTTATTTTTTCCGCTTGTTTGTCCCACTCCCCTTTTAT
TCCTCCACTTTGTCTCCCCCGTCTATGCTCTTTTTCCCTTCCCATTCCTA
ACCATTTTTATATTCTCTTCATCATTCACTCTTATACTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_k06.g1 MSMg01no467_k06.g1 CHROMAT_FILE:
MSMg01no467_k06.g1 PHD_FILE: MSMg01no467_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:34 2005
         (243 letters)



>mm_chr15_72649156_72649798
          Length = 643

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgggtgatgagagtactataataaattaaacctgatgtcatacaccaagtgatgggca 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tctgggtgatgagagtactataataaattaaacctgatatcatacaccaagtgatgggca 260

                                                                       
Query: 61  aggggctgtgatgtgtgacttttaatctgctgggctcccaatctccacgagagccatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggggctgtgatgtgtgacttttaatctgctgggctcccaatctccacgagagccatggc 320

                                                                       
Query: 121 tccagctgctgagaggtaggtagttcttgtcctggccttacaatgcattgttagaatgtc 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 tccagctgctgagaggtaggtagttcttgtcctggccttacaatgcgttgttagaatgtc 380

                                                                       
Query: 181 ctcttgagccccactcctttctttgcatatcaccagccaagcctcaagctggtctgactt 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcgagccccactcctttctttgcatatcaccagccaagcctcaagctggtctgactt 440

              
Query: 241 gag 243
           |||
Sbjct: 441 gag 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)