BAC Information

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BAC

Clone NameMSMg01-468C09
Chromosome15 (Build37)
Map Location 96,124,138 - 96,124,272
singlet/doubletsinglet
Overlap genenone
Upstream geneNell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894
Downstream geneArid2, Sfrs2ip, Slc38a1, Slc38a2, LOC667941, LOC546651, Slc38a4, Amigo2, BC038822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468C09.T7 (MSMg01no468_c09.b1)MSMg01-468C09.TJ (MSMg01no468_c09.g1)
ACCAG551688AG551689
length786869
length of high quality
(start - end)
229 (86 - 314)139 (64 - 202)
definitionCHROMAT_FILE: MSMg01no468_c09.b1 PHD_FILE: MSMg01no468_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:14 2005CHROMAT_FILE: MSMg01no468_c09.g1 PHD_FILE: MSMg01no468_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAAATCCGCG
GAATTCTCAGTAATACTTCCAACAAGGATGNCAGNTCACTTCCACTGGCC
AGCTGCTAACCCCTTGGGCACCTCCTGCCTGTACCTCCTCAGCTCTGGAA
CTACAGTCATCCACTTCCATACTCACTTTTTATGGGGCTTCTAGGGCTCC
GAATGCAAGTTTCTATGCTTGCCCAGCAGACACTTTACTACCTGGGCTCG
CTCTCCTATTCCTTTCAGGCATTTCTTAAGGACATGCTATCTCTTTTTAA
TTACAAATTTGTTGTTTGGTATTATTCTGTTTTTGAATGCCTGCTTAACA
TTAAGCTCAGAGTATTTATTACCTCAACTGATGCTGAATACAAGAGTTTT
TCCTACACTTGTCCAGGGGTGCTTGGGATTGATCCTCATGAACTCTCATA
GTCTGGATGAGCGAGCGCTTTATCACTGAACTGTACTTTCGTCCTTAGAA
TGACGCTTTCTTCAAATGTTTTCGCTATTACCGTTTACTGACATGTGCTT
GTTCATATCTTTGTCACTATCTTGCACTCTTTCATCTCATATTTTTTATT
GCCAAGAATCTTTATCTTTCCTTCAATTGCCTACGTCTCCCATATGGTTT
TTCTCTCTGACTCCTCTTATCCTGTTTTTTTTATTGTTTACACTTCTGTT
CTGCGCCCCACACTTATATTTTTCATTTGTCCCTTTACTTCTCCGTCCTA
CCCGCCTCTTACTTTTTTTTTTCCCCTCCACCCCCG
ATTGCTTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCTGGAATTCAGCACTGTTCAGTAGGTAACTAAAGT
CACAGACCGGATCTGTAAATTGCTAAACAGCTAAAACAGCAGATTACTCC
TAGTCGAGAAAGGAAAATAAAATAATGATAGGGGCAGGGGGGGAAAGTTG
TTTCTTAGTCCGTTAGTCCTGTTCCTTCTCTATCCTTACTCTTACTTTCT
GTATTTTTTTCTCTTTTTCCTTTCTTCCTTTTTTTCTCTTTTTCTTTTTT
CTTTCTTTCTCCTCTTCTTCTTTTTTTTTTTTTTCCCCCAAAGACTTTCT
TCCTTTCTTCTTTTTTTTTTTTTTTCCCCCTCCTATAGCTCTTTCCCCTT
CTTTTATTCTTTTTTTTTCTTCCCCCCCTTTTTTTTTTCCCCTTCCCTTC
TTTCTTTTCTCTTTTTTTTTTTTTTCTTCTCTCCCCTCTCTCTCTCTACC
CTTCTTCGTCTCTTTTTTTATTATTTCTCCTTCATTTTCCTCTTTTTTTT
TCTTCACGTTTTCTTTTTCCTTTTTTCTTTTTCTCTTTTTTCTTTCTTTT
TCCTTATCTTTCATCGTCTTCTTTTACTTTTTTCTTTTTTCCTCCTTTTT
CTTCTTACTCCCCTCGTTCTCTATCCTTTCTTCTTATCCCGTTTTCCTTT
TTTTCCTTCTCTTCCTTCCTTTTCTTTTATCTTTTTTTTCCTTTTTTTTT
TCTTTCTCTCTTTTTTTTTCTGTTTCTTTTTCCTCCATTTTCCTACTTTC
GGTACGTATTTTTTTTATTTTTATCTTTAGTCCCCTTCTTCCTATATTTT
TTTTTTTTTGCAATCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_c09.g1 MSMg01no468_c09.g1 CHROMAT_FILE:
MSMg01no468_c09.g1 PHD_FILE: MSMg01no468_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:14 2005
         (139 letters)



>mm_chr15_96123934_96124472
          Length = 539

 Score =  261 bits (135), Expect = 1e-74
 Identities = 135/135 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcagcactgttcagtaggtaactaaagtcacagaccggatctgtaaattgctaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcagcactgttcagtaggtaactaaagtcacagaccggatctgtaaattgctaaa 264

                                                                       
Query: 65  cagctaaaacagcagattactcctagtcgagaaaggaaaataaaataatgataggggcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagctaaaacagcagattactcctagtcgagaaaggaaaataaaataatgataggggcag 324

                          
Query: 125 ggggggaaagttgtt 139
           |||||||||||||||
Sbjct: 325 ggggggaaagttgtt 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)