BAC Information

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BAC

Clone NameMSMg01-469E06
Chromosome15 (Build37)
Map Location 35,151,054 - 35,151,214
singlet/doubletsinglet
Overlap genenone
Upstream geneLaptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2, Kcns2, Stk3
Downstream geneOsr2, Vps13b, EG666183, Cox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469E06.T7 (MSMg01no469_e06.b1)MSMg01-469E06.TJ (MSMg01no469_e06.g1)
ACCAG552542AG552543
length776772
length of high quality
(start - end)
174 (68 - 241)430 (79 - 508)
definitionCHROMAT_FILE: MSMg01no469_e06.b1 PHD_FILE: MSMg01no469_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:47 2005CHROMAT_FILE: MSMg01no469_e06.g1 PHD_FILE: MSMg01no469_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAGAGGATCCGCG
GAATTCATAATTTCTCAACTTTCACTTGTGTCTCATATTTATGGTAAAAA
TCTCCTGTGTTCTCTTTTGTATATGTGTGTGAGGGACTTGCAGGGAAGTA
TAAGGTCTTCCATGAGTCATTTTTGTAACTGGTCTTTTGGTGGTGGTGGT
AGCAGTGTGTGTGTGTGTGTGTGTGTGTATGTTTCTTTATAACCAATTGA
ATTCACGCCTTCCTGCCTGTTAAGTACATACTCTACTATGTATAATATAA
CTTTTTTTTTCCTTCTTTTTTCTAATTTCAGCATGGGCCCTTGCCTCCAG
GTCTTTGTTACAGCTTCTGACTAGAGGCTCAGTTCTATGTCACAGAGACT
TTCATCTGACCCACGCAAAGACACTATCATTGTCTAGCCACTGTACAACC
AACTGCCGTTTTGCTTTCTTCATATCTATCTGATGATACATTCACATTTG
TCATTCTCAAATTACCGCCATCACACCGTCCTCCTCCGCCTTACTGACAC
CGGACAACCACGTTCTGCTACCGCATACCCAATTCGATCTCCATGTCCGC
CATATTATTACCGCAAACCACCTCCCCACATCTCCCCCCCCTGAATACCC
TCACCCTTGCCCTCTTTATTCCTTTATAACGCATTCATCCCTCTGACCCA
TTGATATATACCTTACAATACTCCCACTCATTATTCTCCACCTTAATCAC
ATACACATTTTAGCCCCATTTTCTAT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACATATTCTCAAAGAAATCACACCACATGTATTCCCTGATA
AATGNATATTAACCCCCAACTCAAGAAACCCCAGATATAAAAAATAATTT
GTTAACCCTTGAAATCTTGAAAAAAGAAGAACGGAAGGGGGGAACTAAGC
CCCTCTCTTAAATCGGTAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_e06.b1 MSMg01no469_e06.b1 CHROMAT_FILE:
MSMg01no469_e06.b1 PHD_FILE: MSMg01no469_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:47 2005
         (174 letters)



>mm_chr15_35150878_35151451
          Length = 574

 Score =  311 bits (161), Expect = 1e-89
 Identities = 161/161 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttcacttgtgtctcatatttatggtaaaaatctcctgtgttctcttttgtatatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 actttcacttgtgtctcatatttatggtaaaaatctcctgtgttctcttttgtatatgtg 278

                                                                       
Query: 61  tgtgagggacttgcagggaagtataaggtcttccatgagtcatttttgtaactggtcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgtgagggacttgcagggaagtataaggtcttccatgagtcatttttgtaactggtcttt 218

                                                    
Query: 121 tggtggtggtggtagcagtgtgtgtgtgtgtgtgtgtgtgt 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tggtggtggtggtagcagtgtgtgtgtgtgtgtgtgtgtgt 177


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)