BAC Information

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BAC

Clone NameMSMg01-470F17
Chromosome15 (Build37)
Map Location 89,235,782 - 89,235,991
singlet/doubletsinglet
Overlap gene1700007E06Rik
Upstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b
Downstream geneCpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10, Alg10b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470F17.T7 (MSMg01no470_f17.b1)MSMg01-470F17.TJ (MSMg01no470_f17.g1)
ACCAG553378AG553379
length753852
length of high quality
(start - end)
210 (325 - 534)144 (71 - 214)
definitionCHROMAT_FILE: MSMg01no470_f17.b1 PHD_FILE: MSMg01no470_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:14 2005CHROMAT_FILE: MSMg01no470_f17.g1 PHD_FILE: MSMg01no470_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGACCGCGGAAT
TCACTTGTCTTGCCGCAGCCAAATCTTGGGATACAGTATTTAGCATTTGA
ATACATAGTAGTACCAGACCAACCCCAACACACCTTTCCTCAAGCTCCTA
TACCCTACTCCCCCACTTCAGTCTCCTCAGCCCTCGTTCCTCCTCTTACT
CTCCCTACCTCTCATCCCCTAAGACCTCTTCCTGTAGTCTCTTAGCCCAG
ACCTTAAAATCCCTGCCATCATTCCCCTCTCTACACACCCTAAGCACCTG
AATGCCCTAGACTTATCTTTTATGCCCTGGGCCTCACTCACCAATCTCAA
TACATGAATTCTAACCCTGAGATATTCTTCACCCACCTCGGCTCTCGCAC
TCTCTCCCTGGATCTACTTCCCAACTTCATCAGTTTCTGCAAAGTCACGT
GGCCACAGCCCCTATCCTTCTACCTGCTTCATGCTCTGTGCCTCGGTTTA
TCTGATCCTCTGGTTATAGAAATATGTGCTGTTGCCTCATTTCCCCCCAG
CTATCTTGCCTGCCCCTTAAACGGCTGTACTTGTCTCTTCAGTGCCTTTA
TCTTGTTCATCCACCNCACTTATGTTTTATACTCAGATGTGTTACCTACA
CATCACCCGTTTTCTCCGCGCCGGTGTAGGATGCTGAGTGGCCCTTCCGT
CTTCGCAGCATTTTGCTGAACTACTGGTTGCTTCTCCGGTGGCCAACCTA
GAN
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXACAGACATTCAGGCAAGGCAAGGCACCGGGACTGGAGAGAT
GTCTGTGGGACATGTGTCACATGAGGATGCGTGTGTGTGTGTGTGTGTGT
GTGTGCGCGTGTGTGTGCGTGCGTGTGTGTGCGTGTGTGTGTGTGTGTGT
GTGTGTGTGTATGGGTGTTTCCCTTCTTTTTCTTTCCCCCCCCCGCCTTT
TTTTTTTCCTTTCCTTCCCTTTCCTTTGTCCTTCTTTTTCTTTCTTCCCT
TCTCCCCGCCCCCCCCCTTTTCGTGGGTTTGCCCCCCCCTCCCCTCTCCC
CCCCCTCTTCCTTTTTTTTTTTCTCCCCCTTTTGCTTCTTGTTCCTTTTT
TCCCTTTTTTCTCCTCCTTTCTTCCCCCCTTTTTCCCTTTTTTCCCTCTT
TTTTTTTTCTTTTTTTCCTTTTTTTCCCCCCTTTTTTCTTCTTTCTCTCT
TTTCCTTTCCCTCTTCTCTTTCTTCTCTTCTCCTCCCTCTCCCTCTTCTT
CTCTCTTTTCTTATTTTCTGGTTCCCCTCCTTCCTTTTTGCTTTTTTCCC
TTCTCCTTCTCTTCTTTTCTTCCCCTCCCCTACTCTCTTTTTGTTTTTCC
TTTACTCCTTCCCTCTTCCCTCGCTCTCTTCTCTTTTCTTTTTTTCTTTT
CTTCTTTTCTCTTTTTTTTCCTCCCCGATTTCTCTTTTTCTTTCTTCTTT
CTCTTTTTTTCCTTCCCCCTCCTTTCCCTTTTCTTCCCTTCCTTTCCCTT
TTTCCTCTCCTTTTCCTCTCCTTTTCTTTCTTCTCTTCTTCCTCTTCTTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_f17.b1 MSMg01no470_f17.b1 CHROMAT_FILE:
MSMg01no470_f17.b1 PHD_FILE: MSMg01no470_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:14 2005
         (210 letters)



>mm_chr15_89235582_89236191
          Length = 610

 Score =  383 bits (198), Expect = e-111
 Identities = 207/210 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctgggcctcactcaccaatctcaatacatgaattctaaccctgagatattcttcaccc 60
           ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 410 ccctgggcctcactcaccaatatcaatacgtgaattctaaccctgagatattcttcaccc 351

                                                                       
Query: 61  acctcggctctcgcactctctccctggatctacttcccaacttcatcagtttctgcaaag 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 acctcagctctcgcactctctccctggatctacttcccaacttcatcagtttctgcaaag 291

                                                                       
Query: 121 tcacgtggccacagcccctatccttctacctgcttcatgctctgtgcctcggtttatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tcacgtggccacagcccctatccttctacctgcttcatgctctgtgcctcggtttatctg 231

                                         
Query: 181 atcctctggttatagaaatatgtgctgttg 210
           ||||||||||||||||||||||||||||||
Sbjct: 230 atcctctggttatagaaatatgtgctgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)