BAC Information

Click to search

BAC

Clone NameMSMg01-470H21
Chromosome15 (Build37)
Map Location 52,579,718 - 52,780,743
singlet/doubletdoublet
Overlap geneLOC100039745
Upstream geneEif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748, Thrap6
Downstream geneExt1, Samd12, EG665097
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470H21.T7 (MSMg01no470_h21.b1)MSMg01-470H21.TJ (MSMg01no470_h21.g1)
ACCAG553482AG553483
length745785
length of high quality
(start - end)
372 (76 - 447)434 (73 - 506)
definitionCHROMAT_FILE: MSMg01no470_h21.b1 PHD_FILE: MSMg01no470_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:25 2005CHROMAT_FILE: MSMg01no470_h21.g1 PHD_FILE: MSMg01no470_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,579,718 - 52,580,089)(52,780,310 - 52,780,743)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACAACACCGCGGAATT
CAACACAATCCCCCACTTACACATACATTATTTCTTTCCTGACCCCCACC
TCCCTTTCTTGCTTCCTTTCCATTGCTGGGATTTAAACCCAGTGCCTTGT
ACGAGCTGATCAAATACTCTACCACTAAGCCATACCTTTATCCACCTATT
AATTTTACTTTGAGACCCGCCACACTAAGTTACCCAGGCTGGCCTCCAGC
TTAGACCTTCATTCCTGAACTTCCCAAGTTGGGTATACAGATCCTGGCTC
AATGCACCTTTCTCTTTTCTGCTCTTGTATCACATTTAATTATTGAAGTA
TGAGTTTACTCAATGTCTATGTCATTCTTGCAGGGCCCATTTATGTCTAC
TTCCCTAAATACAGCAGTAACTGATTGAAATTCTAAGACTAGATACTAAT
GAGACAAGAACAATGACGGATTCATTTACATACATATACCCTCCTTTGAG
ATCATTGTTTTCTGTATCATTCGTCTCTACCTTAACTCAAGGCTTGCCAG
GGCTCTTTGTTTCTGCTGCCAGTACACAATGAAAAATGTCCTGTTCCCCC
TTCCCGACCGACCCTCCCCTTTCCTCCAATACCGGGGGGGGTCCCCTCTG
GTGGCCCGCCCTCCTCCTTCTACCCCGCTCCTTTCCTGGCCCGGATGAGG
GTTGCCGTTCCCCCCCACAACCCCCTCTCCCCGCGACCTTTCTGT
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCATACTTTCCTGGGTGATATTGCTCTG
GAGGTTCTTTTTCTTAAAATGTTGTTGTGTGGCTTTGGTATCAGAAGAAT
GCTGGTCTCATAGAATCATTGGTCAGCAATGTAGAATTGGTCTGAGCTCT
TTAAATGCTGAGTTGAGTTAATGAGTAAAATCACTTTTACCTTCTTTTTC
CGTTTGCCTTTGTCCTTTCTAACTCTCCCTCATGGTGTATAGCTAAGTCC
CGCTCACTCTCCACTGTCTATATTTTTCAAGAATCATAAGGACTTGCTGT
CTTATGAACTCCTCTGGGGTTCTCTTCACATTGTCTATGGGCAAATCCAT
GTATGCTTTCAAGTGCTTTGTAAAGCATATGCTACTGTGCACATAGAATA
TTCCTCTCTATATTCTTAGCCCCTGTCAAGGGGGCTACCAAGAGGCTTTC
TATATAGCCTAGCGTAGAGAGGATAATGGAATACCAATACTGCCCTTTGT
TCCTTACATAGTGTCCTCCCAACTCTGTGCTTCTTTGAGCATTTGTCTTT
GCCTACATGATCCTTAAATTCTGGGCCTCAAGAAAACTTATAGGTTACCC
TGCCTTGCTTGGAAAAACTCCATCATAAGAATTGCCCCCCCCCCCGAATC
TTCGCAGTTTTGGGCACATTACATTGGCACCTAGTCCTTCTACCAAAACT
GAATGTGAATTTCTCTCATGGTGAACTTGGGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_h21.b1 MSMg01no470_h21.b1 CHROMAT_FILE:
MSMg01no470_h21.b1 PHD_FILE: MSMg01no470_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:25 2005
         (372 letters)



>mm_chr15_52579518_52580289
          Length = 772

 Score =  681 bits (352), Expect = 0.0
 Identities = 367/372 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattatttctttcctgacccccacctccctttcttgcttcctttccattgctgggattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattatttctttcctgacccccacctccctttcttgcttcctttccattgctgggattta 260

                                                                       
Query: 61  aacccagtgccttgtacgagctgatcaaatactctaccactaagccatacctttatccac 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 aacccagtgccttgtacgagctgagcaaatactctaccactaagccatacctttatccac 320

                                                                       
Query: 121 ctattaattttactttgagacccgccacactaagttacccaggctggcctccagcttaga 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctattaattttattttgagacccgccacactaagttacccaggctggcctccagcttaga 380

                                                                       
Query: 181 ccttcattcctgaacttcccaagttgggtatacagatcctggctcaatgcacctttctct 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ccttcattcctgaacttcccaagttgggcatacagatcctggctcaatgcacctttctct 440

                                                                       
Query: 241 tttctgctcttgtatcacatttaattattgaagtatgagtttactcaatgtctatgtcat 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 tttctgctcttgtatcacatttaattattgaagtatgtgtttactcaatgtctatgtcat 500

                                                                       
Query: 301 tcttgcagggcccatttatgtctacttccctaaatacagcagtaactgattgaaattcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 tcttgcagggcccatttatgtctacttccctaaatacagcagtaactgattgaaagtcta 560

                       
Query: 361 agactagatact 372
           ||||||||||||
Sbjct: 561 agactagatact 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no470_h21.g1 MSMg01no470_h21.g1 CHROMAT_FILE:
MSMg01no470_h21.g1 PHD_FILE: MSMg01no470_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:25 2005
         (434 letters)



>mm_chr15_52780000_52780833
          Length = 834

 Score =  839 bits (434), Expect = 0.0
 Identities = 434/434 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatactttcctgggtgatattgctctggaggttctttttcttaaaatgttgttgtgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcatactttcctgggtgatattgctctggaggttctttttcttaaaatgttgttgtgtgg 685

                                                                       
Query: 61  ctttggtatcagaagaatgctggtctcatagaatcattggtcagcaatgtagaattggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctttggtatcagaagaatgctggtctcatagaatcattggtcagcaatgtagaattggtc 625

                                                                       
Query: 121 tgagctctttaaatgctgagttgagttaatgagtaaaatcacttttaccttctttttccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgagctctttaaatgctgagttgagttaatgagtaaaatcacttttaccttctttttccg 565

                                                                       
Query: 181 tttgcctttgtcctttctaactctccctcatggtgtatagctaagtcccgctcactctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttgcctttgtcctttctaactctccctcatggtgtatagctaagtcccgctcactctcc 505

                                                                       
Query: 241 actgtctatatttttcaagaatcataaggacttgctgtcttatgaactcctctggggttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 actgtctatatttttcaagaatcataaggacttgctgtcttatgaactcctctggggttc 445

                                                                       
Query: 301 tcttcacattgtctatgggcaaatccatgtatgctttcaagtgctttgtaaagcatatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcttcacattgtctatgggcaaatccatgtatgctttcaagtgctttgtaaagcatatgc 385

                                                                       
Query: 361 tactgtgcacatagaatattcctctctatattcttagcccctgtcaagggggctaccaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tactgtgcacatagaatattcctctctatattcttagcccctgtcaagggggctaccaag 325

                         
Query: 421 aggctttctatata 434
           ||||||||||||||
Sbjct: 324 aggctttctatata 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)