BAC Information

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BAC

Clone NameMSMg01-471D09
Chromosome15 (Build37)
Map Location 82,205,610 - 82,206,245
singlet/doubletsinglet
Overlap geneCyp2d22
Upstream geneSt13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6
Downstream geneLOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471D09.T7 (MSMg01no471_d09.b1)MSMg01-471D09.TJ (MSMg01no471_d09.g1)
ACCAG554032AG554033
length1,301749
length of high quality
(start - end)		---612 (74 - 685)
definitionCHROMAT_FILE: MSMg01no471_d09.b1 PHD_FILE: MSMg01no471_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:23 2005CHROMAT_FILE: MSMg01no471_d09.g1 PHD_FILE: MSMg01no471_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAACTTTTATTTTCTGCGATATATATATTTGGTNTNGTGTTGTGTTCTC
CCTAAAAGCAGGGCAGTAGGGAGGAGTGNGNGGCGCATTATTCCCTCACA
CAANTGGACTTGTTGCAGATATATATATAAATTATATAATCTATAACGTG
CACTGTCAATGCTATCGCTCTGTTACTACCAGCGTTCGTAGTATCTCTCT
ACATCTACTATAATACTACATATTGTTTATTCTGTATTATTATAATTATC
TCTGTCGTCATATATGATTCATTACTATGATATATCGCTATCGAATAGTT
TGATAAGAATGTATGACATTNATATCACTCCCGATCCGTTTGCCGGCGAT
GAACATGTCCTCATCGACTGTCAGACGCACAGTATCGGTCCTTCTCGCGC
ACCTCCACGCAGAGAGTGAATAGTGCATGCCGCGTGTAGATCGCGAGCTT
GATGTGCATACGCGTGACATATTGTATGCCGAATGGATCTGTCGATACCA
TAAAGCAGATATCTTATGTTTGTCTAATAACTAACGCATTACACATCTAT
AATATGATATAGTCATAAGACGAGANGACGATAAGGGAGTGCGATACTTG
GGTCGGAACAGCATAATCGCGCGCTCTATAATACACCGCGCTGCGCTGCG
CGCGCGCGCATCTGATATCGGCGGTTACTATATCCACGTGCACGCAATGT
ATAAGTAGCGCAGTCGTTATGTTGTCGGGCCGTGTTCGTTTCTAGTTGAG
CATTGCGGACGTTTACGTGCGATATATTATCATCGCCGCGATGATCACCC
ACACGAATAGATATCGCCGGCGTGTATTTTATATTTCGTCTCTGACCAAT
CATACTGTCACCTACACGCATCGCGATTGCTGTATTGTGCCTATACTATT
CGACTGCGGTATCGCATGTACTGTCTGTGTCTCATTATACGCATTTGACG
GTGTCTCTAACATGATGTAACAATAGTATCACCGCCGTCCGCCCCATCAC
GCCCCATCGTATCATTTATCTCCCGCCCACCCACTTCTACTCGCTATTCT
CGATACTGGACATTTCAGATCATAGTATGTTAGTATGTCTCGAGTTATAT
ATACGAGACATATAGACACGGCGAAAATGATCGANTGGTGACGCTAACGC
GATATGATAATGATTATTAGTGTTACCTCATATCAGATAATCCGACTCAC
TGATGTATTCTCTCATTTCTACGTCCGACATGCCTTATGGTATAAGATGC
ACCTCGCCTCAGAGTAGATCGTCGACAGCACCATATATCCACACTCACTG
N

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCGAGATCTGCTGGCTTTTGCCTCCT
CTGAATGCTGGGATTAAAGGTCTCCACGACTGCATTGGGCTTTTTCCTTT
TAAAATGTTAGATTTCTTTCTTTCTTTTTCTTTTCTTTTTTGAAACAGTT
TCACTGTGTAGCGTGGGCTGTCCTGGAACTCAGTATGTTAGATGAGACTG
GTCTAGAGCTCAAAGAAATATGCCCGCCTCTGCCTCTTAAGTGCTGGGGT
TAGAGGCACACACCTTCTTTTCTGGCCTTGAAGTCTTTGGTTTAGAGATG
GTTTAAGATGGAATTTATAACCCAGCTGCTTTAGCCTCCCAATTACAGGC
ATGCTGGAATCGGAAAGCAACCCCAGCACTACCGCTACCATCCTGTTAAC
TGCATCTCAAACTGGCTGCTAGGATCCATCCCGCCTCCTAGCTGTTGCCT
TTGGAAAATCCAGCGTGACCTTGGGTCCTGCACCACTCTCCTCACGGGGG
AGCCTCTTAACCTGCGTTCTGGGGGGGGGGCAGCTCCCTGTCCCGCATGC
AGTTTTACCACCACCCACTTGTGGTCACCATGGCTTCTCCTGCCCTCCAA
GAATTCCCTTACCTTTTGGAAGCCTGCTGGCATATTCTGGAAGTCCATGT
GCAGCAGGTTCCCAAGCACAGGCCACGGCATATGGCCTGGAGGGTAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_d09.g1 MSMg01no471_d09.g1 CHROMAT_FILE:
MSMg01no471_d09.g1 PHD_FILE: MSMg01no471_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:23 2005
         (612 letters)



>mm_chr15_82205431_82206445
          Length = 1015

 Score = 1071 bits (554), Expect = 0.0
 Identities = 603/640 (94%), Gaps = 35/640 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   gagatctgctggcttttgcctcctctgaatgctgggattaaaggtctccacgactgcatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gagatctgctggcttttgcctcctctgaatgctgggattaaaggtctccacgactgcatt 239

                                                                       
Query: 64  gggctttttccttttaaaatgttagatttctttctttctttttctttt------------ 111
           ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 240 gggctttttccttttaaaatgttagatttctttctttctttttctttttctttttctttt 299

                                                                       
Query: 112 ------------cttttttgaaacagtttcactgtgtagcgtgggctgtcctggaactca 159
                       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tctttttcttttcttttttgaaacagtttcactgtgtagcgtgggctgtcctggaactca 359

                                                                       
Query: 160 gtatgttagatgagactggtctagagctcaaagaaatatgcccgcctctgcctcttaagt 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gtatgttagatgagactggtctagagctcaaagaaatatgcccgcctctgcctcttaagt 419

                                                                       
Query: 220 gctggggttagaggcacacaccttctttt----ctggccttgaagtctttggtttagaga 275
           |||||||||||||||||||||||||        |||||||||||||||||||||||||||
Sbjct: 420 gctggggttagaggcacacaccttc----acagctggccttgaagtctttggtttagaga 475

                                                                       
Query: 276 tggtttaagatggaatttataacccagctgctttagcctcccaattacaggcatgctgga 335
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tggtttaagatggaatttataacccagctgctttagcctcccaattacaggcatgctgga 535

                                                                       
Query: 336 atcggaaagcaaccccagcactaccgctaccatcctgttaactgcatctcaaactggctg 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 atcggaaagcaaccccagcactaccgctaccatcctgttaactgcatctcaaactggctg 595

                                                                       
Query: 396 ctaggatccatcccgcctcctagctgttgcctttggaaaatccagcgtgaccttgggtcc 455
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 596 ctaggatccatcccgcctcctagctgttgcctttggaaaatccagcatgaccttgggtcc 655

                                                                       
Query: 456 tgcaccactctcctcacgggggagcctcttaacctgcgttctgggggggggg---cagct 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 656 tgcaccactctcctcacgggggagcctcttaacctgcgttctgggggggggggggcagct 715

                                                                       
Query: 513 ccctgtcccgcatgcagttttaccaccacccacttgtggtcaccatggcttctcctgccc 572
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ccctgtcccgcatgcagttttaccaccacccacttgtggtcaccatggcttctcctgccc 775

                                                   
Query: 573 tccaagaattcccttaccttttggaagcctgctggcatat 612
           ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 776 tccaaaaattcccttaccttttggaagcctgctggcatat 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1015
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1005
Effective search space:   605010
Effective search space used:   605010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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