BAC Information

Click to search

BAC

Clone NameMSMg01-472P02
Chromosome15 (Build37)
Map Location 101,714,527 - 101,715,155
singlet/doubletsinglet
Overlap geneKrt76
Upstream geneScn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77
Downstream geneKrt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472P02.T7 (MSMg01no472_p02.b1)MSMg01-472P02.TJ (MSMg01no472_p02.g1)
ACCAG555358AG555359
length761768
length of high quality
(start - end)		635 (44 - 678)546 (73 - 618)
definitionCHROMAT_FILE: MSMg01no472_p02.b1 PHD_FILE: MSMg01no472_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:45 2005CHROMAT_FILE: MSMg01no472_p02.g1 PHD_FILE: MSMg01no472_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGCTTTCACGCTAGGGGGGCAGTGGGATGTGCTTCCTGAAGGTGGG
GAGAGTCCCCAATTTAACAAGATGAGTGCTCTGTGTACACCTATCCCAAG
AGCCCAAGTAGATGAGCAGAGTTGAAACCATATCAACTCAGTGTCCTTTA
TACCTACTTTTATACCTACTTCTAGTTTTCTAGAGGACCTAATTTTACTC
TAGTCTTGAATCTTATGAATCATGAGTCCTTGAATAAAAGGCAAACACCA
GTCTATGAGGCACACTGCTAATTTATTGAGAAAAGAGAATATAACTTTTC
ATAAGCAAAAGACCCAGAGCTCAGGAGGTTTTAAGGGGATAGATGAGCCA
GCTGTCAGGAGAGTCCCATGAGAACCAACAGTTTGGAAACAGTTTCACCT
GTGAGTGACAGATGGACAGAATGGACTAGGCTAGACTAGAAAGCTTGGGA
AGGCCTAGCCTCTGGTACTGCTGACCACATTTCAGATTCACCACAGGCTC
TTCTCTAGGAGCGCCATCATCCCAGACTAGTAGTTGGACTACCCTGACCT
AAGAGAAGACTTAAAGATATAGGAGCAAAGAAGTTCGGCCCCTTCTCCAA
GGAACTTGAGTTNAAGCAGGGTTGAACTGTGCACCTGTTGATGCCAAGAA
GTTGGGAGCAGATGCCATTGCAGGCTGAGGCAGGGAAAGCAGGAGGGTGC
GGATGCTTTGC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGACGAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTCGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAGCA
GCCTGGCGGTTCCTCAGAAAACTGAAGATATGGATACAGAGGAATGGATA
CAGAAAATGTGGTACATTTACACAATGGAGTACTACTCGGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCA
TCCTGAGTGAGGTAACCCAATCACAAAGGAACTCACACAATATGTACTTA
CTGATAAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGAT
ACAATTTGCTAAATGCATGAAACTGAAGAAGAACAAAGACTGAAGTGTGG
ACACTCTGCCCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTT
ACAGAGACAAAGTTTGGAGCTGTGTCAAAAGGATAGACCATCTAGAGCCT
GCCCTATCCAGGGTTCTCTCCCATAATCGCGTTTCAAATGCTGAGCCCTT
TGCTTATACTATTAAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_p02.b1 MSMg01no472_p02.b1 CHROMAT_FILE:
MSMg01no472_p02.b1 PHD_FILE: MSMg01no472_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:45 2005
         (635 letters)



>mm_chr15_101714323_101715355
          Length = 1033

 Score = 1123 bits (581), Expect = 0.0
 Identities = 619/634 (97%), Gaps = 8/634 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgctttcac--gctaggggggcagtgggatgtgcttcctgaaggtggggagag 62
           |||||||||||  ||   ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgct--cagaggctagaggggcagtgggatgtgcttcctgaaggtggggagag 262

                                                                       
Query: 63  tccccaatttaacaagatgagtgctctgtgtacacctatcccaagagcccaagtagatga 122
           |||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 263 tccccactttaacaagatgagtgctctgt--acacctatcccaagagcccaagtagatga 320

                                                                       
Query: 123 gcagagttgaaaccatatcaactcagtgtcctttatacctacttttatacctacttctag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagagttgaaaccatatcaactcagtgtcctttatacctacttttatacctacttctag 380

                                                                       
Query: 183 ttttctagaggacctaattttactctagtcttgaatcttatgaatc-atgagtccttgaa 241
           ||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct: 381 ttttctagaggacctaattttactctactcttgaatcttatga-tccatgagtccttgaa 439

                                                                       
Query: 242 taaaaggcaaacaccagtctatgaggcacactgctaatttattgagaaaagagaatataa 301
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 440 taaaaggcaaacaccagtctatgaagcacactgcaaatttattgagaaaagagaatataa 499

                                                                       
Query: 302 cttttcataagcaaaagacccagagctcaggaggttttaaggggatagatgagccagctg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttttcataagcaaaagacccagagctcaggaggttttaaggggatagatgagccagctg 559

                                                                       
Query: 362 tcaggagagtcccatgagaaccaacagtttggaaacagtttcacctgtgagtgacagatg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcaggagagtcccatgagaaccaacagtttggaaacagtttcacctgtgagtgacagatg 619

                                                                       
Query: 422 gacagaatggactaggctagactagaaagcttgggaaggcctagcctctggtactgctga 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gacagaatggactaggctagactagaaagcttgggaaggcctagcctctggtactgctga 679

                                                                       
Query: 482 ccacatttcagattcaccacaggctcttctctaggagcgccatcatcccagactagtagt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccacatttcagattcaccacaggctcttctctaggagcgccatcatcccagactagtagt 739

                                                                       
Query: 542 tggactaccctgacctaagagaagacttaaagatataggagcaaagaagttcggcccctt 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tggactaccctgacctaagagaagacttaaagatataggagcaaagaagttcggcccctt 799

                                             
Query: 602 ctccaaggaacttgagttnaagcagggttgaact 635
           |||||||||||||||||| |||||||||||||||
Sbjct: 800 ctccaaggaacttgagttaaagcagggttgaact 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1033
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1023
Effective search space:   639375
Effective search space used:   639375
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |