ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCAGAAATCCGCGGAA
TTCCATAACCTTTCTAAACATTCTGTGTCTCATTTGTAACAAACTCAGAG
GCTGGGCTATTAGCTTGTAAAATACTATCTTGTTGGCAAGGTATCCTGTT
ACACAAAGTAACCCATGTTGCCTAGAACTCATTTTGTCTCTTTTCTATCG
CAGTTTTGAACCTATACTTGTAGCATACTATAAGTGTGCAATAGAATGTG
GGGAAGCACAATACATTATTAATTCTCTTGCTCATTCCCCTTTGCGCTCC
TTGGAAAATCTAGCCTTGTTTTTTTCAGCATTGGAATTCAAGCAGCACAA
CTTAAGCTCAGCTGTCAAGTCTCTTTGTAAATGCAGGTTATATTGCATTC
CTTTCTTTTCTCTTCCCTTCTCTCAGAAAAGTATTAAAAATTTAATTATG
CATTTGATTCAACATACACAAAAGTAGATATATTTTTGAAAAAATATAGG
GAAATGTATTTACCGCAAGTACTTTTATTCATTTTCTTTTACAGGAAAAG
GAAGAATTTCTCGGATTCTTGGTGATTATTCAAAATGCCTTTCCTGTATA
AAGCAGTTTCTAATGATAATTGCTTTAANAAAAAAGTAATATGTCTTGTA
AACACTATCACTTATTCATTTACCAATGAATCTATTTTCCGTTCCTGATA
GTACTATGAAGATCTTGGAGTTGGTGGGGACCCCCCCTGCATTTTTGAAC
ATCTTGTCTTTCG

TCGATGATATTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGTGGAATTTTTGGGTCAA
CGTAAGTACACTATCTTATCATCTGCAAATAGCGTTATTTTGACTTTTTC
CTTTTCAGCTTGTATCTCTTTGACCTTCTTTTGTTTTCTAATTGCTCTGG
CTAGATCTTCTAGTACTATATTGAATAGGTAGGGAGAGAGTGGGTAGACT
TGTCTAGTCCCTGACTTTCGTGGGATTGCTTCAAGTTTCTCTCCATGTAA
ATTGATATTGGCTACTGGTTGGCTGTATATTGCTTTTACTAAGTTTAGGT
ATTGGCCTTGAATTCCTGATCTTTCCAAGACTTTTAACATGATGGGGTAT
TGAATTTTGTCAAATGCTTTCTAATCTTCTAATGAAATGAACATGTGTTT
TTCTTCAAGTTCGTTTATAAAGTGGATTACGTTGAATGTACTCTTTATAT
TGAATCTCCCCTGATTTCCTGTTATGAAGTCTACTTGACCTTGGCTACTG
TTCTTGTTGATGTGCTTTTTACTGTCTTTTTTCTTGACATTATCTATTTC
CTTCTATTCTTGCCTTTATTCTTTTTTCTCCTTTTCTTTCTCACATTCCA
CCTCTTCGTCTCTCTTTTTTGTCTTATTTTTTTTTCTTCTTTCCCATCTT
CCTTCTCCCTTCCTTCCTTACTACTACCTCGCTGCTCTCCTCACTTCTTT
AAACGATATTATTCTCTCCTTATTTCTCTTCGTTTCATTCTCTCCTCT

Query= MSMg01no473_o15.b1 MSMg01no473_o15.b1 CHROMAT_FILE:
MSMg01no473_o15.b1 PHD_FILE: MSMg01no473_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:11 2005
         (573 letters)



>mm_chr15_20218502_20219475
          Length = 974

 Score = 1033 bits (534), Expect = 0.0
 Identities = 561/574 (97%), Gaps = 9/574 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccataacctttc-taaacattctgtgtctcatttgtaacaaactcagaggctggg 63
           |||||||||||||  || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gaattccataaccaatcataagcattctgtgtctcatttgtaacaaactcagaggctggg 715

                                                                       
Query: 64  ctattagcttgtaaaatactatcttgttggcaaggtatcctgttacacaaagtaacccat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ctattagcttgtaaaatactatcttgttggcaaggtatcctgttacacaaagtaacccat 655

                                                                       
Query: 124 gttgcctagaactcattttgtctcttttctatcgcagttttgaacctatacttgtagcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gttgcctagaactcattttgtctcttttctatcgcagttttgaacctatacttgtagcat 595

                                                                       
Query: 184 actataagtgtgcaatagaatgtggggaagcacaatacattattaattctcttgctcatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 actataagtgtgcaatagaatgtggggaagcacaatacattattaattctcttgctcatt 535

                                                                       
Query: 244 cccctttgcgctccttggaaaatctagccttg----tttttttcagcattggaattcaag 299
           ||||||||||||||||||||||||||||||||        || |||||||||||||||||
Sbjct: 534 cccctttgcgctccttggaaaatctagccttggaaa----ttccagcattggaattcaag 479

                                                                       
Query: 300 cagcacaacttaagctcagctgtcaagtctctttgtaaatgcaggttatattgcattcct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cagcacaacttaagctcagctgtcaagtctctttgtaaatgcaggttatattgcattcct 419

                                                                       
Query: 360 ttcttttctcttcccttctctcagaaaagtattaaaaatttaattatgcatttgattcaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttcttttctcttcccttctctcagaaaagtattaaaaatttaattatgcatttgattcaa 359

                                                                       
Query: 420 catacacaaaagtagatatatttttgaaaaaatatagggaaatgtatttaccgcaagtac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 catacacaaaagtagatatatttttgaaaaaatatagggaaatgtatttaccgcaagtac 299

                                                                       
Query: 480 ttttattcattttcttttacaggaaaaggaagaatttctcggattcttggtgattattca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttttattcattttcttttacaggaaaaggaagaatttctcggattcttggtgattattca 239

                                             
Query: 540 aaatgcctttcctgtataaagcagtttctaatga 573
           ||||||||||||||||||||||||||||||||||
Sbjct: 238 aaatgcctttcctgtataaagcagtttctaatga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 974
Length adjustment: 10
Effective length of query: 563
Effective length of database: 964
Effective search space:   542732
Effective search space used:   542732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)