BAC Information

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BAC

Clone NameMSMg01-474E06
Chromosome15 (Build37)
Map Location 102,212,941 - 102,213,362
singlet/doubletsinglet
Overlap genenone
Upstream geneKrt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7
Downstream geneSp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474E06.T7 (MSMg01no474_e06.b1)MSMg01-474E06.TJ (MSMg01no474_e06.g1)
ACCAG556368AG556369
length769749
length of high quality
(start - end)		427 (45 - 471)422 (81 - 502)
definitionCHROMAT_FILE: MSMg01no474_e06.b1 PHD_FILE: MSMg01no474_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:39 2005CHROMAT_FILE: MSMg01no474_e06.g1 PHD_FILE: MSMg01no474_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACATGTTTACGTCATTATTCTACCAGCTGAGCTGTATAGTTGTTC
AGCTCTGGAAAGAAACTCAAGGAGATGCTCCATAGATAAATGCCTGCTGA
TGTGTGGAGAGAATCCAGACCAAGCTGACTTCCAACCAGGGAAGCTAATC
TTGTCCTTGTCCCCATTGATAGTGAGGCAGGGGAGTGTCTATCTTTGTTC
TTTAAACAATTTATCTTAGTCACTCCTTTTTGTGTGTGTGTCTCTTTCTC
ATTCTCTCTCTGCGGGGTCTATTACGCAGACCCATCTATCTTGGAACTAT
CTACGTAGACAAGGCTGGCCTCAAACTCACAGAGATCTGTCTGCTTCTGC
CTGAAAGCGTGGCCTCCATTCTCGTATATCCAGCTTCTTCAAATCTCTAT
TTTCTGAGTTTGAGGTCAGCCTGGCCTACAGAGTGAGTTCTAGGACCGCT
AGGGCTATTCAAAGAAACCCTGTCTTCTATAATAACTAAAAAATCCTTCC
ACTTCCTTCACCTCACTTAACGAATCAATTTTCTCTGTATCGCCTCCCGA
ATTGTCGCTACTTTTCACTTTTCGATCTGGTTGTTTCCTCTCGTGGCGAG
TCCTCTCCTTAATCCACATCCTCTTCTTCTGCGCCATGTCTCCTTTCTCA
ACATTATCCTTCTCTAATAATCTTTCCCATACCCGCCTTTCCTTCCCCAA
TATCCTCCTATCTCCCTTN

CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCTGTGGCCTGGCACTC
ACTGTTTAGTAAGCCCTTCCAGAGGACCCATATCAGTCCCTCACAGCTGA
CTATAGCTCCAGGAGATCTGATGCCCTCTCCTGTTCTCCCTGGGCACCTT
ACCCACATGGGGCATGGACGCATACACACACACACACACACACACACACA
CTCAAAATAATAAAAATAAATCTTACAGAAACAGAAGAGGGGGTCAGCGA
GATGGTTCCACAGATGATTTATCTTGCTGTCAGCCTGATAGCGGGAATTA
GATCTCAGAAGCCACATGGTGGAATGATGGACCGACTCCTCAAGTGGTCC
TTGGACCTCTTAGTAAAAATAAGAGAGTTTGGAAGGAAGACATTGCCCTA
GGAATCTCCGATCTCAGTGGGTCAGGCAGACAGATGTCATACATACCTCC
TACAGTTAAAGCTCACAAATGCCTTATGTAATGCGTAACCCTCACCACTT
GTTGGTAACCACGAGGGTTGATGCTGCTTGATTAACTTGGTTCTGTGCTT
CCTTGACCCATGAAAGGCCAGTGTCTGCAACATACCCGGTTTAGACCGTT
TTTTTCGCTTTTTTACCCTAATAAATGCGTTTTTGCCGAGATAAATCTCT
CCATTGTTATATTAAACATATGTTAATTTTCCTCCATTTACATCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_e06.b1 MSMg01no474_e06.b1 CHROMAT_FILE:
MSMg01no474_e06.b1 PHD_FILE: MSMg01no474_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:39 2005
         (427 letters)



>mm_chr15_102212896_102213721
          Length = 826

 Score =  764 bits (395), Expect = 0.0
 Identities = 416/423 (98%), Gaps = 1/423 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacatgtttacgtcattattctaccagctgagctgtatagttgttcagctctgg 64
           ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaattccacatg-ctaggtcattattctaccagctgagctgtatagttgttcagctctgg 409

                                                                       
Query: 65  aaagaaactcaaggagatgctccatagataaatgcctgctgatgtgtggagagaatccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aaagaaactcaaggagatgctccatagataaatgcctgctgatgtgtggagagaatccag 349

                                                                       
Query: 125 accaagctgacttccaaccagggaagctaatcttgtccttgtccccattgatagtgaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 accaagctgacttccaaccagggaagctaatcttgtccttgtccccattgatagtgaggc 289

                                                                       
Query: 185 aggggagtgtctatctttgttctttaaacaatttatcttagtcactcctttttgtgtgtg 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 288 aggggagtgtctatctttgttctttaaacaacttatcttagtcactcctttttgtgtgtg 229

                                                                       
Query: 245 tgtctctttctcattctctctctgcggggtctattacgcagacccatctatcttggaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tgtctctttctcattctctctctgcggggtctattacgcagacccatctatcttggaact 169

                                                                       
Query: 305 atctacgtagacaaggctggcctcaaactcacagagatctgtctgcttctgcctgaaagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 atctacgtagacaaggctggcctcaaactcacagagatctgtctgcttctgcctgaaagc 109

                                                                       
Query: 365 gtggcctccattctcgtatatccagcttcttcaaatctctattttctgagtttgaggtca 424
           ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 108 gtggcctccgttctcctatatccagcttcttcaaatctctattttctgagtttgagggca 49

              
Query: 425 gcc 427
           |||
Sbjct: 48  gcc 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 826
Length adjustment: 9
Effective length of query: 418
Effective length of database: 817
Effective search space:   341506
Effective search space used:   341506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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