Query= MSMg01no474_j12.b1 MSMg01no474_j12.b1 CHROMAT_FILE:
MSMg01no474_j12.b1 PHD_FILE: MSMg01no474_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:06 2005
(489 letters)
>mm_chr15_8466485_8467373
Length = 889
Score = 737 bits (381), Expect = 0.0
Identities = 476/541 (87%), Gaps = 54/541 (9%)
Strand = Plus / Plus
Query: 1 cttgagctttgtacaaggaggtaagaatggatcaatttgcattcttctacatgataaccg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 cttgaactttgtacaaggaggtaagaatggatcaatttgcattcttctacatgataaccg 210
Query: 61 ccagttgtgccagcaccatttgttgaaaatgctgtcttttttccactggatggttttaga 120
||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 211 ccagttgtgccggcaccattcgttgaaaatgctgtcttttttccactggatgattttag- 269
Query: 121 tc--ccttgtcaaagatcaaatgaccataggtgtgtggattcatttctgggttttcaatt 178
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 270 -cctccttgtcaaagatcaaatgaccataggtgtgtggattcatttctgggtcttcaatt 328
Query: 179 ctattccattcatttacctatctattgctgtaccagtaccacgcagtttgttgttg---- 234
||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||
Sbjct: 329 ctattccattcatttacctgtctgttgctgtaccagtaccacgctgtttgttgttggttt 388
Query: 235 ---------------------------------------------tgttttgttttgttt 249
|||||||||||||||
Sbjct: 389 tgttttgttttgttttgttttgttttgttttgttttgttttgttttgttttgttttgttt 448
Query: 250 t-aatcacaattgctctgtagtacagcttgaggtcaggcatggtgatttcaccagaggtt 308
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 449 tgtatcacaattgctctgtagtacagcttgaggtcaggcatggtgattccaccagaggtt 508
Query: 309 cttttattgttgagaatagttgttgccatcctaggttttttgttattagttgcattttta 368
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cttttattgttgagaatagtttttgccatcctaggttttttgttattagttgcattttta 568
Query: 369 attcctctacataattttaacttttgctatataatctaagctggtattaatcttaagtac 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 attcctctacataattttaacttttgctatataatctaagctggtattaatcttaagtac 628
Query: 429 agcccatatgtgaaagcacaagaatttctcctttttctacctattaaatgatattaatgg 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agcccatatgtgaaagcacaagaatttctcctttttctacctattaaatgatattaatgg 688
Query: 489 c 489
|
Sbjct: 689 c 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_j12.g1 MSMg01no474_j12.g1 CHROMAT_FILE:
MSMg01no474_j12.g1 PHD_FILE: MSMg01no474_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:06 2005
(407 letters)
>mm_chr15_8658269_8659075
Length = 807
Score = 687 bits (355), Expect = 0.0
Identities = 398/425 (93%), Gaps = 19/425 (4%)
Strand = Plus / Minus
Query: 1 actttctgggaacaagtgcaagacactgacacgcaaggacgtgataaattcctagaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 actttctgggaacaagtgcaagacactgacacgcaaggacgtgataaattcctagaaaga 481
Query: 61 taaaatatgaccaaaagcaacggagaagagcctaggatggggggcaggatggagagattc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 taaaatatgaccaaaagcaacggagaagagcctaggatggggggcaggatggagagattg 421
Query: 121 cagcaaggggtccgcaagcggacacttctggccaagaagaaagttcagagcctcatctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 420 cagcaaggggtccgcaagcggacacttctggccaagaagaaagttcagagcctcaccaag 361
Query: 181 gaagatgttaagagttacctgtttcggaatgccttcgtcctgctcacggtcactgctgtc 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 360 gaagatgttaagagttacctgtttcggaatgccttcgttctgctcacggtcactgctgtc 301
Query: 241 attgnngttgagtcgtttgtcctcaaccaacattacaaaagcttgtatcctgtttctttg 300
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 attgtgggtgagtcgtttgtcctcaaccaacattacaaaagcttgtatcctgtttctttg 241
Query: 301 ggatgcatgaatgcctggggggtgttatcagatag-------------------actgat 341
||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 240 ggatgcatgaatgcctggggggtgttatcagatagactgactgtaggtattccaactgat 181
Query: 342 cggtcaggatctcctctgcatttgaagaagttggcttttctttctgttttgtttggtttg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 180 cggtcaggatctcctctgcatttgaagaagttggcttttctttctgttttgtttgttttg 121
Query: 402 ttttg 406
|||||
Sbjct: 120 ttttg 116
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space: 317604
Effective search space used: 317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
