BAC Information

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BAC

Clone NameMSMg01-475H16
Chromosome15 (Build37)
Map Location 18,068,303 - 18,124,862
singlet/doubletdoublet
Overlap geneLOC666835
Upstream geneLOC100040162
Downstream geneLOC666839, Cdh10, EG666857
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475H16.T7 (MSMg01no475_h16.b1)MSMg01-475H16.TJ (MSMg01no475_h16.g1)
ACCAG557296AG557297
length781759
length of high quality
(start - end)		385 (60 - 444)385 (80 - 464)
definitionCHROMAT_FILE: MSMg01no475_h16.b1 PHD_FILE: MSMg01no475_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:16 2005CHROMAT_FILE: MSMg01no475_h16.g1 PHD_FILE: MSMg01no475_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,068,303 - 18,068,653)(18,124,478 - 18,124,862)
sequence
GCGGCCGCTATACGACTCCTATAGGTACAGGATCCGCGGAATTCTTTGTT
TAGTTCTCGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGTACCTTC
TTGAGTTCTTTATATATATTGGGGGGACTAATATCAAATATATATGAAAA
TCACATTCTTAAAGAATGAAAATTCCCTGGGGATATGGAAAGAAGTATAA
AGGATTCAAAGAGAAGAAGTAAGCAAAAAATTACTCATTTAAATTGTCAG
TCAATAATCTTCCTTATCATCTCAATTAAAGGGCAAACCAGTCAAGAAAA
TCATCTTTAAATTCTAGTCTCTGGAAGAGTATATATATATATATATATAT
ATATATATATATATATATATATATATATATATACATATATATATATATAT
ATATATATATATATATATATATATATATGTATATATATATATATAGAGAA
AAATATATATGGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTTTGTGGAAG
AGGAAAGATATATATATGTGTATATATATATAGATAGATTTGTTTATTTG
TGTGAGTGTGAGATATATATATATATTTATATTTNGGGGGGGAGATATAT
ATATATAGAGGGAAGGGTGTGATATATATATAATNATATANTAGAGAGAG
ATAGAAATAGAGAGAGAGGAGGGGGGGGGGATGTTGGTTTTTTTGGTGTG
AGGGGGGGGGGGGGGAAAAAAAAAAATAATTAACGCATNTTCCTTTTCAG
TGGGGGGGTGGTTNAGAGGGGGGTGGTTTTT

TTCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCATTACAACACAGACCA
TCCTCACAAGATATTTTCACAGGTGCAAAAGTGTCAGAACTACTATGATA
TAGTTAAGCACTCTCTGACTGCACTTGAGTCTCCTCAGCAAGGCAGAATT
TCTGCCTGGTAACTAGCCAATGCCTGCCAATGCCTTAGAATATAGGCAAA
AACTAAAACTATTAGACAAATGCTCATTACAATTTAAATCAGAGATACTT
CTTTTAAATGGAGGGTAGTGTATACATAGGAATGATTGCTCAAAATGTTG
AGAATGAGTGACAGTTAAATATTTAGGCATAAAACAGAAAATTTATACCA
CTATGGTTAATTCCAAGAGAAGAGCTGAAAGATAGGGGGAAATATGGAAA
ATGTTATTTTCTCAAAACTTCAGTGACATTGCACATCAATTATTACTGTC
TTCATTTGCGACAGCAAAAGATGAAGTTTGCTATTATTCCCGTATGTACC
ACGGACATTGGTTAATGGAGCCCTAACTCTTTGATTGAAGCCATGACCCC
CGTCCTTTCCAACGGCTCGCGTAGTTATTTGTCTTTCCTTCGCTCCTCCG
TTCCTTCTCCTTTCCCCCTTTCCATCTCCTTTTCCCTCCCCCCTGCCTTT
TGTTCCCCCCTTCGCCCTTTTTTTTTCCTTTTCCCCCCCCTTTCCCTCTC
CTCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_h16.b1 MSMg01no475_h16.b1 CHROMAT_FILE:
MSMg01no475_h16.b1 PHD_FILE: MSMg01no475_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:16 2005
         (385 letters)



>mm_chr15_18068103_18068887
          Length = 785

 Score =  609 bits (315), Expect = e-179
 Identities = 342/351 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccccatttttaatggggttatttgattttctgtaccttcttgagttctttatatatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccccatttttaatggggttatttgattttctgtaccttcttgagttctttatatatat 260

                                                                       
Query: 61  tggggggactaatatcaaatatatatgaaaatcacattcttaaagaatgaaaattccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggggactaatatcaaatatatatgaaaatcacattcttaaagaatgaaaattccctg 320

                                                                       
Query: 121 gggatatggaaagaagtataaaggattcaaagagaagaagtaagcaaaaaattactcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggatatggaaagaagtataaaggattcaaagagaagaagtaagcaaaaaattactcatt 380

                                                                       
Query: 181 taaattgtcagtcaataatcttccttatcatctcaattaaagggcaaaccagtcaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaattgtcagtcaataatcttccttatcatctcaattaaagggcaaaccagtcaagaaa 440

                                                                       
Query: 241 atcatctttaaattctagtctctggaagagtatatatatatatatatatatatatatata 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 atcatctttaaattctagtctctggaagagtatatatatatatatatatatacatatata 500

                                                              
Query: 301 tatatatatatatatatatatatacatatatatatatatatatatatatat 351
           || || |||| | | ||||||||  ||||||||||||||||| ||||||||
Sbjct: 501 tacatgtatacacacatatatatgtatatatatatatatatacatatatat 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 303
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no475_h16.g1 MSMg01no475_h16.g1 CHROMAT_FILE:
MSMg01no475_h16.g1 PHD_FILE: MSMg01no475_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:16 2005
         (385 letters)



>mm_chr15_18124146_18124930
          Length = 785

 Score =  737 bits (381), Expect = 0.0
 Identities = 384/385 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcattacaacacagaccatcctcacaagatattttcacaggtgcaaaagtgtcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 catgcattacaacacagaccatcctcacaagatattttcacaggtgcaaaagtgtcagaa 658

                                                                       
Query: 61  ctactatgatatagttaagcactctctgactgcacttgagtctcctcagcaaggcagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ctactatgatatagttaagcactctctgactgcacttgagtctcctcagcaaggcagaat 598

                                                                       
Query: 121 ttctgcctggtaactagccaatgcctgccaatgccttagaatataggcaaaaactaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttctgcctggtaactagccaatgcctgccaatgccttagaatataggcaaaaactaaaac 538

                                                                       
Query: 181 tattagacaaatgctcattacaatttaaatcagagatacttcttttaaatggagggtagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 537 tattagacaaatgctcattacaatttaaatcagagatacttcttttaaatggatggtagt 478

                                                                       
Query: 241 gtatacataggaatgattgctcaaaatgttgagaatgagtgacagttaaatatttaggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtatacataggaatgattgctcaaaatgttgagaatgagtgacagttaaatatttaggca 418

                                                                       
Query: 301 taaaacagaaaatttataccactatggttaattccaagagaagagctgaaagataggggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 taaaacagaaaatttataccactatggttaattccaagagaagagctgaaagataggggg 358

                                    
Query: 361 aaatatggaaaatgttattttctca 385
           |||||||||||||||||||||||||
Sbjct: 357 aaatatggaaaatgttattttctca 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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