BAC Information

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BAC

Clone NameMSMg01-475O06
Chromosome15 (Build37)
Map Location 23,283,442 - 23,283,802
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545091, Cdh18
Downstream geneLOC624863, LOC666989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475O06.T7 (MSMg01no475_o06.b1)MSMg01-475O06.TJ (MSMg01no475_o06.g1)
ACCAG557611AG557612
length745780
length of high quality
(start - end)		249 (84 - 332)361 (83 - 443)
definitionCHROMAT_FILE: MSMg01no475_o06.b1 PHD_FILE: MSMg01no475_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:49 2005CHROMAT_FILE: MSMg01no475_o06.g1 PHD_FILE: MSMg01no475_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCACCTTCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGA
CACGCACCGCGGAATTCTCTTCTTTTCCTGAAGTCTAAAGTTCAAGTAAA
TAGTGTTGGTTACTGCCAGGATAAACACCTTTATTGTACCATTTAGAATA
TCTTCATGATTTCTGTATATTTTACAGTTCCTAGACATCACAGCTAGAAA
GAACTATTGATTGCTGTTCTCCCTTGGCAACTTGCATAGCTCTATCTGAT
ACTTTGGTGTCTTGTCCTAAGAAAGAAGAACAAAATATTATACTTTCAGC
AAAAGGATGTATACCTTCAAGCAAAGATAGTTTTTTTCCACATTTTGGAG
TATCTTTCAGCTCATCTGATCAACAATTCAGAAACATCTTTTCTATGCTT
ACTCCTTTAATTCAGGCACTTGGCATGATGGGAGAGACAGGTAGAATTCT
GTGAATCCATGGCCAGATTTGTATGTATAGAGAGTTTCAGGCCATGTTGG
GCCACATAGCCCGATTCTGAATAAATGATACCTTGCCATTTCAGACAGAT
ATTATTGGACACTTAATCCTTAATAGCTACTATGTACTTACACAAAGGCT
TATTGCCCCATATATTCATTCCCACTCCTCCGCGATTATCACTCGCGCAG
GCTGGCTTGAAAACTTTCTTCTTCAATGATATTCTTCCTTACCTCGCATG
TCTACAGCCTCTTGCTTCCCCATTTTCTCCCCCTCTCTTTCCTTG

NTCCCTCGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATTATTGACAAGGAT
AAATGTATTTGAGAGAAGTGAGAAATATATTCCATACAAAAGAAGTCATT
TATTATAAAAATCCTTTCAGGTGATATTTTTTAGAAAAAGAAAAATCAAA
GAGGTCATCTCACCTAAAATGAAAAGGCAATTCTGAGATATGATACATTG
AAATAAAATCATGAATCAGCTCAGAAGATAAGGGCCTGTGAACTATAGTG
CTTCTGGTTTGGCTGCAAATAAGATGCACAGACATTGACAAATTTTATGT
AAAGAAATAATATCATCTTAGGGTTTTGTTTAATTGAATTGGATGTACAA
GGAGGAAAAGAAAGTGTAGAACTAGGCTGAAAGCAGGAAATGCCTTAACA
GTAAGTAAACTAGAAGCGCAGAGTAGTGTTAGATACGGAGCATTTGGTCA
TGAAGGAGCTGTGTGGCGCGCAAGGGAAAACGTAATTCATGATGCTATCA
CCGCTCCTTTCCTTTTTACCACCGCCCTTTTTTTTTTCCCCCCTCCTTTT
TTTTTCTTTCCCCCCCCTCTCTTTTTTTTTTCTTCCTTTCCGCCCCTCCC
TTTTTTTCCCCTCCCTCCTTCCTTTTTTCCCCCTCCCCTTCCCGTTTTTT
TCCCTCTATCTTATTCTTTTCGTTCCGCCCTATCCCTTTTTTTTTTCCGC
CTCCCTTTTTTTTTTTTCCTCCTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_o06.g1 MSMg01no475_o06.g1 CHROMAT_FILE:
MSMg01no475_o06.g1 PHD_FILE: MSMg01no475_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:49 2005
         (361 letters)



>mm_chr15_23283242_23284002
          Length = 761

 Score =  659 bits (341), Expect = 0.0
 Identities = 356/361 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catattattgacaaggataaatgtatttgagagaagtgagaaatatattccatacaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catattattgacaaggataaatgtatttgagagaagtgagaaatatattccatacaaaag 502

                                                                       
Query: 61  aagtcatttattataaaaatcctttcaggtgatattttttagaaaaagaaaaatcaaaga 120
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 aagtcatttattgtaaaaatcctttcaggtgatattttttagaaaaagaaaaatcaaaaa 442

                                                                       
Query: 121 ggtcatctcacctaaaatgaaaaggcaattctgagatatgatacattgaaataaaatcat 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ggtcatctcacctaaaatgaaaaggcaactctgagatatgatacattgaaataaaatcat 382

                                                                       
Query: 181 gaatcagctcagaagataagggcctgtgaactatagtgcttctggtttggctgcaaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatcagctcagaagataagggcctgtgaactatagtgcttctggtttggctgcaaataa 322

                                                                       
Query: 241 gatgcacagacattgacaaattttatgtaaagaaataatatcatcttagggttttgttta 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 321 gatgcacagacattgacaaattttatgtaaagaaataatatcatcttagggtgttgtgta 262

                                                                       
Query: 301 attgaattggatgtacaaggaggaaaagaaagtgtagaactaggctgaaagcaggaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgaattggatgtacaaggaggaaaagaaagtgtagaactaggctgaaagcaggaaatg 202

            
Query: 361 c 361
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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