BAC Information

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BAC

Clone NameMSMg01-476C21
Chromosome15 (Build37)
Map Location 92,472,113 - 92,472,363
singlet/doubletsinglet
Overlap genePdzrn4
Upstream geneLrrk2, Muc19, Smgc, LOC100042529, Cntn1
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476C21.T7 (MSMg01no476_c21.b1)MSMg01-476C21.TJ (MSMg01no476_c21.g1)
ACCAG557832AG557833
length826797
length of high quality
(start - end)
251 (65 - 315)94 (73 - 166)
definitionCHROMAT_FILE: MSMg01no476_c21.b1 PHD_FILE: MSMg01no476_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:12 2005CHROMAT_FILE: MSMg01no476_c21.g1 PHD_FILE: MSMg01no476_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CTCTGTATACCTGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTC
CCAAGTGCCGGGATTAAAGGTGTTGCACTACCACTGCCTGGCAACACTGT
TAAATATGTTAATATGTATACTAACTTAAACCCGTTGTAACTTGAGAAGC
TTATTTTTAGTTTCCTTTTAGAAATCTGCACACTAGTTGTATTATATCTA
AACACGTTACAGAACATGATACGTATTGATAATTTGTATGATGCCAAGGT
AGAGCATTGAGTAGGACTTTTCCCATTCGTTCTCCACAGCCCTGTGCGCC
TATGCTCCTCATCCATGAAAGCAAACACAACCGTGATAGTGGCCGTAACA
CATTTGTAGATTTTGAAACAATAAATCTAATTTTATATAATCACAGGTAA
TGTGATCCCTTCACCATACGAGGTGAAAATGCACTTGTATTGCTCATGCT
AATCAAGGCCTTCTGTTCACAAATAATATCACACGCATCTATGCTTACGT
TTGACTACCATTCCTTTCTACATCCCATTCGTCCCTTTACCCCCTCCTCC
GCCTTTCTCCTTTTTCCCTTCCCTTTCCTCTTCTTTTTTTGCTTTCCCTC
CTTTTCCTATCCCTTCCTTTCTCTTTCCCCTTCCCTTACACCCCCCCCCC
TATTCCATTTTCCTCTTTCTTCCACCTCTCCCCCTTTTCCCTTCTTCCCT
CCTCTTTCCCCCCTCCTCCTCCTCTATTTTCATCCCTCTTCCCTCCTTAC
CTTTACTTCCTCTCACCCCTTTCTTT
GAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGCGAGAATCGCGCTTCTCCTTCTCCTTCTCCTTCTCCTTCT
CCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCT
TTCTCTCCTTCTCCTTCGGTCGCCTTCTCCTCCTCCTCCTCCTCCCCCTC
CTCTCCCCCTCCCTCCCCTCCCTCTCCTTCTCCTTTAGAACCTATTATTT
GTGTCACTCCTCTTTTCATATAATTTCCAGAATGTTCTGTTTATGGATGG
TTGTAGATTTAACATTTTTTTGGTGAGCCAACCAACTTCCCCATATTGTC
TGAAAGCACTGATAATCCCACTCTCATTCAGTGAGGCAGACAATCTTTCT
GAAGAGCGGGTCATTTGAGTACTGTAATATGGAGTAAGGAGGGAAAATAT
ATTTCCGTATGAAAGGTAGTTGGCGGCATTGGATGGCTTCCTAAGGTTAA
ATAAGAGAAAGTGGGGTATAGGCTATCCAACGGGAAGGGATTTAGATTGC
ATGAGGGATTGTGGGACAAATAACTGTGGTGAAAAAAACAATGAGTGATA
TATAATGATAGGGTGCACTAAAAATGAGCAAGAGTAGTGGAGGTGTACCA
CACATAAGTGTGAAGCATATATTTAGAGCATTGCACTAAAAAATGTAGAT
TCTCCACCATTTAACGCGCACAGCGGGTCATTGTATATATTTAATATCGT
GGAAAAAAGATTAGTGAACCAAATAATATAACCGATTGAGATGTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_c21.b1 MSMg01no476_c21.b1 CHROMAT_FILE:
MSMg01no476_c21.b1 PHD_FILE: MSMg01no476_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:12 2005
         (251 letters)



>mm_chr15_92471913_92472563
          Length = 651

 Score =  478 bits (247), Expect = e-139
 Identities = 250/251 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggccttgaactcagaaatctgcctgcctctgcctcccaagtgccgggattaaaggtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggccttgaactcagaaatctgcctgcctctgcctcccaagtgccgggattaaaggtgtt 260

                                                                       
Query: 61  gcactaccactgcctggcaacactgttaaatatgttaatatgtatactaacttaaacccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcactaccactgcctggcaacactgttaaatatgttaatatgtatactaacttaaacccg 320

                                                                       
Query: 121 ttgtaacttgagaagcttatttttagtttccttttagaaatctgcacactagttgtatta 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtaacttgagaagcttatttttggtttccttttagaaatctgcacactagttgtatta 380

                                                                       
Query: 181 tatctaaacacgttacagaacatgatacgtattgataatttgtatgatgccaaggtagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatctaaacacgttacagaacatgatacgtattgataatttgtatgatgccaaggtagag 440

                      
Query: 241 cattgagtagg 251
           |||||||||||
Sbjct: 441 cattgagtagg 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)