BAC Information

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BAC

Clone NameMSMg01-476G09
Chromosome15 (Build37)
Map Location 70,797,075 - 70,797,321
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383050
Downstream geneLOC383051, 1700010C24Rik, LOC100040847, Col22a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476G09.T7 (MSMg01no476_g09.b1)MSMg01-476G09.TJ (MSMg01no476_g09.g1)
ACCAG558000AG558001
length756757
length of high quality
(start - end)
247 (71 - 317)241 (76 - 316)
definitionCHROMAT_FILE: MSMg01no476_g09.b1 PHD_FILE: MSMg01no476_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:30 2005CHROMAT_FILE: MSMg01no476_g09.g1 PHD_FILE: MSMg01no476_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXAATCCAAACAGCGATCCGCGGA
ATTCTTCATTTGACTTCAATGACAGAACACTAATAACAGACTTATTAAAT
AGTAAACTAGAATAAATAGTAATACCAAAGTAATAAATTACCTGATACCA
CAGTGTAAGCCTTGCCAGGGAAAGCCAATGCAATTTTGTTCCTAAAATAA
GTTGTGCTGCCAAATATGTGTCCTAGAATGTTAAAAAGGGTTGGGAAGCA
TTCACTTGTCTTGTATTTCCTCTTTTTGACTATTATCCATCAGCTTCTAA
AATATGTAATAAAAATGTACTCTTTGCACATCAAAGTAGAAATAAACATG
GTTTCTAAAAAGGAGATAAGACTAGTCAAACATAAAATTGGCTCATAATT
TTTATGTTTTTAGTATAGATCCTAGGATGGAACAGTTTTCTATATTTCAG
GAAAATCCAGGATAACGTGAAGAAGACCCTTTTCCTTGGGATGTTATCAG
TCAATAACATTTTAAAAAATGATTGCTACATTATTGATTAAGGATCCACA
GCTTGAGCCTACCAGTCTAACTTAGCTTCGAGATTCCCAATACTATCTCC
CAAACGAGCTACATGCATAAATTATCAACTTGTGTCCGGATGACTTGTTG
AATTATTATGCCTTCGCAATACTTTGATCTATACCATACTACATTCTTTC
TTTGTGTGTTGCCCTGACTCCCGATTTGCACGACTGACTGTTTCCACCCA
CTATAN
GGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGA
TCAGTCTGGCGGTTCCTCATAATTTGGATATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAGGAATCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTACAAAGAATGAATT
TACGACATTCCTGGCCAAATGGACGGACCTGTAGGTTATCTTTCCGAGCG
AGGCAATACCTCCTCTACGGTACTCACCCCACATGCTCCTCCTGATAATT
GTTTTTTATTTTCCCAACCTACATCTCCCCCTTATACTCCATCCCCCTTT
CTTCTTTTTATGTTATCTCACCTACTATCGTCCACCGTTACATCGTATTC
CCACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_g09.b1 MSMg01no476_g09.b1 CHROMAT_FILE:
MSMg01no476_g09.b1 PHD_FILE: MSMg01no476_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:30 2005
         (247 letters)



>mm_chr15_70796875_70797521
          Length = 647

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacagaacactaataacagacttattaaatagtaaactagaataaatagtaataccaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gacagaacactaataacagacttattaaatagtaaactagaataaatagtaataccaaag 388

                                                                       
Query: 61  taataaattacctgataccacagtgtaagccttgccagggaaagccaatgcaattttgtt 120
           |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 387 taataaattacccgataccacagtgtaagccttaccagggaaagccaatgcaattttgtt 328

                                                                       
Query: 121 cctaaaataagttgtgctgccaaatatgtgtcctagaatgttaaaaagggttgggaagca 180
           |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 327 cctaaaataatttgtgctgccaactatgtgtcctagaatgttaaaaagggttgggaagca 268

                                                                       
Query: 181 ttcacttgtcttgtatttcctctttttgactattatccatcagcttctaaaatatgtaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttcacttgtcttgtatttcctctttttgactattatccatcagcttctaaaatatgtaat 208

                  
Query: 241 aaaaatg 247
           |||||||
Sbjct: 207 aaaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)