BAC Information

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BAC

Clone NameMSMg01-476J06
Chromosome15 (Build37)
Map Location 4,294,748 - 4,471,251
singlet/doubletdoublet
Overlap genePlcxd3
Upstream geneGhr, LOC223278, Fbxo4, AW549877, LOC100039196, Oxct1
Downstream geneC6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476J06.T7 (MSMg01no476_j06.b1)MSMg01-476J06.TJ (MSMg01no476_j06.g1)
ACCAG558135AG558136
length754767
length of high quality
(start - end)
546 (68 - 613)490 (77 - 566)
definitionCHROMAT_FILE: MSMg01no476_j06.b1 PHD_FILE: MSMg01no476_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:43 2005CHROMAT_FILE: MSMg01no476_j06.g1 PHD_FILE: MSMg01no476_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,470,712 - 4,471,251)(4,294,748 - 4,295,237)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGTGTTTCAGGTGCAAAAGCTGGTGTTTGAAAAATAAATTAAAA
ATAGGCCTTTAAGAAATCAAAATCTGTGTCTTTTGGCATTGCTGAAGTGC
GGGAAACACATCTGTAGTATTTAGAAATGAAAGTCAGTCTGAAAGCTGAG
GTCCTTAGAGCCCAGCTGCATTTGGTGTCCCTGAATGCCACTCAGAACTT
CAACCATTACCTTTACCTCTATGTTCATATGCTTGGGATTTGGTTAACCA
AAATATTAGAAAGATTTTTTATTATTGCAGTGGAACAAGCTTTCAGTTCA
AACTTCTAATTCTCAAATGTGGATCCATAAGCCCTGGGCCTGGTGATCAT
GTGGTGACCCTTTTTTTGGTCACAGAAAAGTTCATTACATCTTATGGTTC
TAATTTGGAGCCTTTGGCATGAATAATCTTGGCACAAAAGTCAAGGGGAT
AGCTGAAAAAGAATCAATTTCTCTTTAGAGCTCTCCTTATGATCTGAAGA
AAAGACAGTAAAAACTTTCTTTCCCAGCCTCTTTTAGAAGGCAGCAAATT
GCCTTTGCTGGCCAGTAGTCAAGGGCAAAAAGAGACTTTTTCCTATTGTG
CTTTGTCCAGAAAGCCAGAGCATCCTCTGCTCAGCTCTGACTCCATTCTA
AGGTAACAAAGCAAATCCCAGACTTCTCATAACACTTTAGCACTCCATAC
AGCG
TGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCTGAAATTGCATTTAATGTC
ATGTGGTTTTCCCCAGTTGACATCATACATTATTTGAACTTCTCATTTGA
TTTGCAGTAGATTGCACAGGAAATATAATTAAGTGAACAATTGCAGTTAC
AAACTCTGTATCAAGAGGAAGAAGAGGCAGAGAGATTCAAGATAAAAATA
AATCTCAAAGGAATTAAAACTCATCCCATCTGCAATTAAAGTGAATATTT
AAGTTGTGAGGTTACAGAGCCTGTTTAGACATGGTGAGTTAATTTATAGG
TATTTAATTAACTCCATAGGGTGAGATCTACTATTGACAGACTGTGATAT
AGTACTCAGAGTGCTAATTATAAAGGTGATTCAAAATAAAATTAAAAGCT
CTGTAAGTAAAGGCTGTGAAGCCTGTTCTTTCATAGATCCCAAATACATT
GTATCAGGTTACAAACTTGATACAAGACACAGAACATCTGGATCTTCTTT
GGTGGGGGCTGTGGGCACAGAAGAAAAAGAGGGAAATGAGAAATGAGCTC
TCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCNCTCTCTC
ACTCTCCCTCTCTCTCTGGGGGNGNGAGCGCCCGCCGCTCCCTCCCCCTT
CTCTCCCTCTCACCCCCCCTTATTCTCGTTATCCCGTCTTTCCCGCGCCC
TCTTTCTCCCTTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_j06.b1 MSMg01no476_j06.b1 CHROMAT_FILE:
MSMg01no476_j06.b1 PHD_FILE: MSMg01no476_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:43 2005
         (546 letters)



>mm_chr15_4470512_4471451
          Length = 940

 Score =  967 bits (500), Expect = 0.0
 Identities = 532/546 (97%), Gaps = 6/546 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcaaaagctggtgtttgaaaaataaattaaaaataggcctttaagaaatcaaaatctgt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgcaaaagctggtgtttgagaaataaattaaaaataggcctttaagaaatcaaaatctgt 681

                                                                       
Query: 61  gtcttttggcattgctgaagtgcgggaaacacatctgtagtatttagaaatgaaagtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtcttttggcattgctgaagtgcgggaaacacatctgtagtatttagaaatgaaagtcag 621

                                                                       
Query: 121 tctgaaagctgaggtccttagagcccagctgcatttggtgtccctgaatgccactcagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 tctgaaagctgaggtccttagagcccagctgcatttggtgtccctgaataccactcagaa 561

                                                                       
Query: 181 cttcaaccattacctttacctctatgttcatatgcttgggatttggttaaccaaaatatt 240
           |||||||||      |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttcaacca------ttacctctatgttcatatgcttgggatttggttaaccaaaatatt 507

                                                                       
Query: 241 agaaagattttttattattgcagtggaacaagctttcagttcaaacttctaattctcaaa 300
           ||||||||||||||  | |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 506 agaaagattttttaaaactgcagtggaacaagctttcagttcaaacttctaattctcaga 447

                                                                       
Query: 301 tgtggatccataagccctgggcctggtgatcatgtggtgaccctttttttggtcacagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgtggatccataagccctgggcctggtgatcatgtggtgaccctttttttggtcacagaa 387

                                                                       
Query: 361 aagttcattacatcttatggttctaatttggagcctttggcatgaataatcttggcacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 386 aagttcattacatcttatggttctaatttggagcctttggcatgaataatcatggcacaa 327

                                                                       
Query: 421 aagtcaaggggatagctgaaaaagaatcaatttctctttagagctctccttatgatctga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagtcaaggggatagctgaaaaagaatcaatttctctttagagctctccttatgatctga 267

                                                                       
Query: 481 agaaaagacagtaaaaactttctttcccagcctcttttagaaggcagcaaattgcctttg 540
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agaaaagacagtaaaaaatttctttcccagcctcttttagaaggcagcaaattgcctttg 207

                 
Query: 541 ctggcc 546
           ||||||
Sbjct: 206 ctggcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 940
Length adjustment: 10
Effective length of query: 536
Effective length of database: 930
Effective search space:   498480
Effective search space used:   498480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no476_j06.g1 MSMg01no476_j06.g1 CHROMAT_FILE:
MSMg01no476_j06.g1 PHD_FILE: MSMg01no476_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:44 2005
         (490 letters)



>mm_chr15_4294548_4295437
          Length = 890

 Score =  917 bits (474), Expect = 0.0
 Identities = 486/490 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctctgaaattgcatttaatgtcatgtggttttccccagttgacatcatacattatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctctgaaattgcatttaatgtcatgtggttttccccagttgacatcatacattatttg 260

                                                                       
Query: 61  aacttctcatttgatttgcagtagattgcacaggaaatataattaagtgaacaattgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacttctcatttgatttgcagtagattgcacaggaaatataattaagtgaacaattgcag 320

                                                                       
Query: 121 ttacaaactctgtatcaagaggaagaagaggcagagagattcaagataaaaataaatctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacaaactctgtatcaagaggaagaagaggcagagagattcaagataaaaataaatctc 380

                                                                       
Query: 181 aaaggaattaaaactcatcccatctgcaattaaagtgaatatttaagttgtgaggttaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggaattaaaactcatcccatctgcaattaaagtgaatatttaagttgtgaggttaca 440

                                                                       
Query: 241 gagcctgtttagacatggtgagttaatttataggtatttaattaactccatagggtgaga 300
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagcctgggcagacatggtgagttaatttataggtatttaattaactccatagggtgaga 500

                                                                       
Query: 301 tctactattgacagactgtgatatagtactcagagtgctaattataaaggtgattcaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 tctactattgacagactgtgatatagtactcagagtgctaattataaaggtgatttaaaa 560

                                                                       
Query: 361 taaaattaaaagctctgtaagtaaaggctgtgaagcctgttctttcatagatcccaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaattaaaagctctgtaagtaaaggctgtgaagcctgttctttcatagatcccaaata 620

                                                                       
Query: 421 cattgtatcaggttacaaacttgatacaagacacagaacatctggatcttctttggtggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattgtatcaggttacaaacttgatacaagacacagaacatctggatcttctttggtggg 680

                     
Query: 481 ggctgtgggc 490
           ||||||||||
Sbjct: 681 ggctgtgggc 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)