Query= MSMg01no476_j06.b1 MSMg01no476_j06.b1 CHROMAT_FILE:
MSMg01no476_j06.b1 PHD_FILE: MSMg01no476_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:43 2005
(546 letters)
>mm_chr15_4470512_4471451
Length = 940
Score = 967 bits (500), Expect = 0.0
Identities = 532/546 (97%), Gaps = 6/546 (1%)
Strand = Plus / Minus
Query: 1 tgcaaaagctggtgtttgaaaaataaattaaaaataggcctttaagaaatcaaaatctgt 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgcaaaagctggtgtttgagaaataaattaaaaataggcctttaagaaatcaaaatctgt 681
Query: 61 gtcttttggcattgctgaagtgcgggaaacacatctgtagtatttagaaatgaaagtcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtcttttggcattgctgaagtgcgggaaacacatctgtagtatttagaaatgaaagtcag 621
Query: 121 tctgaaagctgaggtccttagagcccagctgcatttggtgtccctgaatgccactcagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 tctgaaagctgaggtccttagagcccagctgcatttggtgtccctgaataccactcagaa 561
Query: 181 cttcaaccattacctttacctctatgttcatatgcttgggatttggttaaccaaaatatt 240
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttcaacca------ttacctctatgttcatatgcttgggatttggttaaccaaaatatt 507
Query: 241 agaaagattttttattattgcagtggaacaagctttcagttcaaacttctaattctcaaa 300
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 506 agaaagattttttaaaactgcagtggaacaagctttcagttcaaacttctaattctcaga 447
Query: 301 tgtggatccataagccctgggcctggtgatcatgtggtgaccctttttttggtcacagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgtggatccataagccctgggcctggtgatcatgtggtgaccctttttttggtcacagaa 387
Query: 361 aagttcattacatcttatggttctaatttggagcctttggcatgaataatcttggcacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 386 aagttcattacatcttatggttctaatttggagcctttggcatgaataatcatggcacaa 327
Query: 421 aagtcaaggggatagctgaaaaagaatcaatttctctttagagctctccttatgatctga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagtcaaggggatagctgaaaaagaatcaatttctctttagagctctccttatgatctga 267
Query: 481 agaaaagacagtaaaaactttctttcccagcctcttttagaaggcagcaaattgcctttg 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agaaaagacagtaaaaaatttctttcccagcctcttttagaaggcagcaaattgcctttg 207
Query: 541 ctggcc 546
||||||
Sbjct: 206 ctggcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 940
Length adjustment: 10
Effective length of query: 536
Effective length of database: 930
Effective search space: 498480
Effective search space used: 498480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no476_j06.g1 MSMg01no476_j06.g1 CHROMAT_FILE:
MSMg01no476_j06.g1 PHD_FILE: MSMg01no476_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:44 2005
(490 letters)
>mm_chr15_4294548_4295437
Length = 890
Score = 917 bits (474), Expect = 0.0
Identities = 486/490 (99%)
Strand = Plus / Plus
Query: 1 ttctctgaaattgcatttaatgtcatgtggttttccccagttgacatcatacattatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctctgaaattgcatttaatgtcatgtggttttccccagttgacatcatacattatttg 260
Query: 61 aacttctcatttgatttgcagtagattgcacaggaaatataattaagtgaacaattgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacttctcatttgatttgcagtagattgcacaggaaatataattaagtgaacaattgcag 320
Query: 121 ttacaaactctgtatcaagaggaagaagaggcagagagattcaagataaaaataaatctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacaaactctgtatcaagaggaagaagaggcagagagattcaagataaaaataaatctc 380
Query: 181 aaaggaattaaaactcatcccatctgcaattaaagtgaatatttaagttgtgaggttaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggaattaaaactcatcccatctgcaattaaagtgaatatttaagttgtgaggttaca 440
Query: 241 gagcctgtttagacatggtgagttaatttataggtatttaattaactccatagggtgaga 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagcctgggcagacatggtgagttaatttataggtatttaattaactccatagggtgaga 500
Query: 301 tctactattgacagactgtgatatagtactcagagtgctaattataaaggtgattcaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 tctactattgacagactgtgatatagtactcagagtgctaattataaaggtgatttaaaa 560
Query: 361 taaaattaaaagctctgtaagtaaaggctgtgaagcctgttctttcatagatcccaaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaattaaaagctctgtaagtaaaggctgtgaagcctgttctttcatagatcccaaata 620
Query: 421 cattgtatcaggttacaaacttgatacaagacacagaacatctggatcttctttggtggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattgtatcaggttacaaacttgatacaagacacagaacatctggatcttctttggtggg 680
Query: 481 ggctgtgggc 490
||||||||||
Sbjct: 681 ggctgtgggc 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|