BAC Information

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BAC

Clone NameMSMg01-476K18
Chromosome15 (Build37)
Map Location 20,960,341 - 20,960,772
singlet/doubletsinglet
Overlap genenone
Upstream geneAcot10, LOC100040302
Downstream geneCdh12, LOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476K18.T7 (MSMg01no476_k18.b1)MSMg01-476K18.TJ (MSMg01no476_k18.g1)
ACCAG558207AG558208
length786782
length of high quality
(start - end)
432 (63 - 494)431 (71 - 501)
definitionCHROMAT_FILE: MSMg01no476_k18.b1 PHD_FILE: MSMg01no476_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:51 2005CHROMAT_FILE: MSMg01no476_k18.g1 PHD_FILE: MSMg01no476_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTATGTCTCCAAAAGCTAAGTCACTCCCTTACACAGGAATTTACCATC
ACTAAAGAAGAAGGAAGTTTCAGACCAAAGGAGAAACCAGAATAGATACT
ATAGCAGAGTTACACCTATACACATGTATTTACAATGGCCTAAGGGGAAG
GTGGACTATACAAGAGACTAAAATAGGAACTATGGCAAGGACGCGAAGTC
CTTGACCCTGGCTTCTAAGATTAGTGAATTTTAGGTGGAGCCCTTGTTGA
TCCCAGCTGTTATCAATGTATTCTATCCTGGGTGGTTCCCTTTAGACCTT
TTGTGTTTGCATTCCTCTGTTTTATGTAAGATTCCGGTTACCTCAATTGT
ACCTTGTGAATATGTCACCCAACTTCCTTATTGTCCTCTGCATAAAAAGT
CTGATGCTCGAGTTGTAAAATTACATTCAGATTCCATATGAACTCTCCTT
TGTGTGTGTCTGTTTGCCGCTCATCCACGCCTTGCCCACCCACGTTGAGA
GACCCCGCTTCCTGCTGACTCAGGAACCCCGACGGTCTGCGGCAGATAGT
CTGTTATCCTTATATTGAGTTCTTTTCTCCTGTCCCTATTCCTATACCAC
CTTCATGCCCATGTTTTATCTCGCACGATTAACCCCCCTCCTTTTTTTAC
CCCTTTATTTATCTCCCCCCCCCCATTTCTCGCCTTACCTATTCTTCCGC
ACATCTCCCCCATGTTCTTTTTTCATGCCATTATCC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGCATTTCACAAGCAAGGAGTGTCGGAAAC
TCATTTGAACATTTTCTTTCTGCCTCATTTATTTGATGTATCTTCTTACT
CTTCTGGCTGACACAAATTCAGCCTTTTGACCCTGTGGTGGAGCCAACAA
ATCTTAAGAGAAGGTAAAATGTTGGCAAAAATTGAGAAGGCTCAAATCTG
ATATGTCATAATACATTTCCATTTACCTTATTAACTTATAGTATTCAATT
CCATTAAAAGTTTGTTGTACATCAATGATTGCCATGATCATTTCTTTTGC
CTTTAGTTACACTATATAAAGTATTCCCTCCTTTTACTAAGAACTGTGGT
GACCTCATCATTTAATATTTTATATTTATTATCAGTACATAAACTCTGGG
CTTCCTCAACCATAAGTAAAATTTCCATATTTTAATAGCGTGGATTTCAG
CTTTTCACATGGTCAACTATTACAAAGTAATTCTATTTATTTGATTCTGC
ATTATCATGTTGTGATCGCTGCTAACTATATCTGCACACGAATGATTCCC
CCCCCTAACTTCCTTTGGTACTCCTATCAAATATTCCCTGATCCCCCCTA
CCCTGTCTATTTTCTCCGGTTTTCCCCATTCTTTCACTATCCCTGCCTTT
CTTTTCTCACAACCTTCTTTTTCCCCCCCTCCTTTTTCCTTTATTACCCG
CTTCCCCCCTCTTTATCTCTGTTTCTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_k18.g1 MSMg01no476_k18.g1 CHROMAT_FILE:
MSMg01no476_k18.g1 PHD_FILE: MSMg01no476_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:51 2005
         (431 letters)



>mm_chr15_20960141_20960971
          Length = 831

 Score =  804 bits (416), Expect = 0.0
 Identities = 428/432 (99%), Gaps = 1/432 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatttcacaagcaaggagtgtcggaaactcatttgaacattttctttctgcctcattt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 agcatttcacaagcaaggagtgtcggagactcatttgaacattttctttctgcctcattt 260

                                                                       
Query: 61  atttgatgtatcttcttactcttctggctgacacaaattcagccttttgaccctgtggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgatgtatcttcttactcttctggctgacacaaattcagccttttgaccctgtggtg 320

                                                                       
Query: 121 gagccaacaaatcttaagagaaggtaaaatgttggcaaaaattgagaaggctcaaatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagccaacaaatcttaagagaaggtaaaatgttggcaaaaattgagaaggctcaaatctg 380

                                                                       
Query: 181 atatgtcataatacatttccatttaccttattaacttatagtattcaattccattaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgtcataatacatttccatttaccttattaacttatagtattcaattccattaaaag 440

                                                                       
Query: 241 tttgttgtacatcaatgattgccatgatcatttcttttgcctttagttacactatataaa 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgttggacatcaatgattgccatgatcatttcttttgcctttagttacactatataaa 500

                                                                       
Query: 301 gtattccctccttttactaagaactgtggtgacctcatcatttaatattttatatttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtattccctccttttactaagaactgtggtgacctcatcatttaatattttatatttatt 560

                                                                       
Query: 361 atcagtacataaactctgggcttcctcaaccataagtaaaa-tttccatattttaatagc 419
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 561 atcagtacataaactctgggcttcctcaaccataagtaaaaatttccatattttaatagt 620

                       
Query: 420 gtggatttcagc 431
           ||||||||||||
Sbjct: 621 gtggatttcagc 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)