BAC Information

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BAC

Clone NameMSMg01-476O22
Chromosome15 (Build37)
Map Location 75,022,139 - 75,022,562
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644
Downstream geneLOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476O22.T7 (MSMg01no476_o22.b1)MSMg01-476O22.TJ (MSMg01no476_o22.g1)
ACCAG558405AG558406
length809793
length of high quality
(start - end)
249 (69 - 317)426 (70 - 495)
definitionCHROMAT_FILE: MSMg01no476_o22.b1 PHD_FILE: MSMg01no476_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:12 2005CHROMAT_FILE: MSMg01no476_o22.g1 PHD_FILE: MSMg01no476_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:12 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACACCGCGGAATTCT
CATATTGTTGCCATGACCTGTGGAGTGATGGGTTTTATGCTTGGAAACGC
TAAATGGAGGCCTTTAGAGTTGCCTGTGCCAAAGAAAATAGTGAATCAAA
ACCAGTATTGTTTCCTGGAAGAATTGCAGAAAATATTGTCACTAACAAGG
ACTTGAAAGATACAGTGGTGGTGGTTCCCACCACATCTCCCTTTAACTCT
CCTATCTGACCAATGAAGAAGATAGATGGATCATGGAGAATGACAGTTGA
CTATGGAAAACTAAATTTTTTTGCTTCTGTGATTGCAGCTATTGTACTAT
ATGTAGTTTTGTTACTTGAGCAATTTAACACATCTCCTGGTACCAGGTAT
GCAGCCACTGATCTAGCAAATGCCTTCTTCTCAGTAACTGTCCATCATGA
CCCCCGAAGCTATTTTCTTTCATTTGGAAACGCCCCTCGGATTTTTGCCT
CCAGGATATATTATTACTCCTGCCCTCTGTCATAAACCACTAAAGGTTTT
CATTCCTCCCTCCCTTTCAATAAACTTAACTTTTTCGCCCCTACATTGCT
GTTCTATGCTCTATAACACCTCTTTTATCCTGTCGTTCCTACCCTTACCT
AACCCTTCCGCAATCCTTTTCTTTTATTTCATCACCCCCCACCTTTCCCC
CCTTTTTTTTTTTCTCCCCTTTTTTTTCTTCTACCCCCCCCTTTTTTCAC
TCCTATATCTTTATTTCCACTCCATTTATTACCCTTTTTTCTTTTACCAC
CATCAAATG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATCTTGGTAGATTTTTCCTTTGATGAGTATT
AAGAGTACTTCCTTATCCTTTTTGATAACTTTCGGTTGAAAGTTGCTTTT
ATTTAATATTTGAATGGTGTTTGAAGACCTGCCCATCTGCTGCTGAGTTG
GAAGCAGACACAATTAACCCTAGCCAGTGTATTGTGGGCAGCACAAGGCT
GTGTTTGTCTAGCAGCCACATGGGTCAGGTCTCACTAGTCCCTAAGGCCT
GTGCTATGATCTGACTGTCTGTTATAAAACAAAAACACATAACAGATATT
AAAGCTGTCTCCAGGTATCAAGACCGGAGGAAGTCGAGTAACTTTCGACT
TCTAAATGCACTTCTTTCTCAGAACCTAGGAAATGGATCTATGGAGGAAC
CACAAGGCATGTACCCTAGAGAAGGAGTGTGTGTGTGTGTGTGTCGCCTT
ATTCCACACCCCTTCCTCTCCCACCTCATTATGCCCCTTCTCATCCTGAT
TACTCTTGACGCTTTCCCTGTTTCATCTCGCCCTACCCCCCCTTTTCCCC
CTTTATTTTCCCCCCCCTTTTCTGCTTTTCCTTATCCATTCCTGTCATTC
CCGTTTTCCCCCCTTTTCTTCTTTCTTTTTCCTTTTTTTCCCCATCATTT
CCAATTACCTCATTTTCTTTCCACCTTCTTCTTTTTCCCCCCCCCCTTCT
TCTTTTTTTTCCTCCTACCTCTTTTCTTTCCTTTTACACCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_o22.g1 MSMg01no476_o22.g1 CHROMAT_FILE:
MSMg01no476_o22.g1 PHD_FILE: MSMg01no476_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:12 2005
         (426 letters)



>mm_chr15_75021938_75022763
          Length = 826

 Score =  766 bits (396), Expect = 0.0
 Identities = 417/424 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   tcttggtagatttttcctttgatgagtattaagagtacttccttatcctttttgataact 61
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 202 tcttggtagatttttcctttgatgagtattaagagtacttccttatccttttcgataact 261

                                                                       
Query: 62  ttcggttgaaagttgcttttatttaatatttgaatggtgtttgaagacctgcccatctgc 121
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 262 ttcggttgaaagttgcttttatttaatatttgaatggtgtgtgaagacctgcccgtctgc 321

                                                                       
Query: 122 tgctgagttggaagcagacacaattaaccctagccagtgtattgtgggcagcacaaggct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgctgagttggaagcagacacaattaaccctagccagtgtattgtgggcagcacaaggct 381

                                                                       
Query: 182 gtgtttgtctagcagccacatgggtcaggtctcactagtccctaaggcctgtgctatgat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgtttgtctagcagccacatgggtcaggtctcactagtccctaaggcctgtgctatgat 441

                                                                       
Query: 242 ctgactgtctgttataaaacaaaaacacataacagatattaaagctgtctccaggtatca 301
           |||||||||||  | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctgactgtctgagagaaaactaaaacacataacagatattaaagctgtctccaggtatca 501

                                                                       
Query: 302 agaccggaggaagtcgagtaactttcgacttctaaatgcacttctttctcagaacctagg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agaccggaggaagtcgagtaactttcgacttctaaatgcacttctttctcagaacctagg 561

                                                                       
Query: 362 aaatggatctatggaggaaccacaaggcatgtaccctagagaaggagtgtgtgtgtgtgt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaatggatctatggaggaaccacaaggcatgtaccctagagaaggagtgtgtgtgtgtgt 621

               
Query: 422 gtgt 425
           ||||
Sbjct: 622 gtgt 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)