BAC Information

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BAC

Clone NameMSMg01-477A05
Chromosome15 (Build37)
Map Location 73,521,757 - 73,522,082
singlet/doubletsinglet
Overlap genenone
Upstream gene1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4
Downstream geneGpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984, Bai1, 1700016M24Rik, Arc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477A05.T7 (MSMg01no477_a05.b1)MSMg01-477A05.TJ (MSMg01no477_a05.g1)
ACCAG558467AG558468
length771723
length of high quality
(start - end)
239 (69 - 307)326 (334 - 659)
definitionCHROMAT_FILE: MSMg01no477_a05.b1 PHD_FILE: MSMg01no477_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:19 2005CHROMAT_FILE: MSMg01no477_a05.g1 PHD_FILE: MSMg01no477_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTCTCCACTTTTGTTTGCTAATAGATTCACTAATTCGAGAGGTCCG
CGGAATTACTTTGTTCCCAGGCTGCTCTCGGACTCAGAAATCCGCCTGCC
TCTGCCTCTCAAGTACTGGGATTAAAGGCGTGCACCACCACTGCCTGGCT
TTGGGGGTTTTTTTTTAGAAACATTTATTATTTTAAATTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAG
AGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATATGGG
AGGGGGCCTCGATGTGTATCTCAGGTTGGCTCAGAACTCACTGTTGAAGC
ACAGGTTGGCTTTGAACCTATGATACCCCTGACGTATTCACCATGTCCCG
CATTTGACTTTGTGTCCCGAGCACTCTGCGTATGGTCAAACCCCGACAAG
GGCACCACACTGGACACCCATTGCTCCTGGGCTTCCTTGCTTGGCTCTCA
GCCACTTCCATATTTTGCTGTCCTCCTTCCCTTTTCCTACAGATTTTTAT
GATACCCCATATCCTTGGCAGTCCTTTTTCTCCTTCTGTTGGCCCCATTT
TTCCTCGCTTCTTTTTTAAACCTTTTCCTTATTCTAACTTGATTCAAATG
ATAAACTCGACCTTATTGTACTATGTATTTTATGCATCGTTTTTTCATCG
CGCGCTTTGACACATTTAACTCCCTTTTATTTCCCACCCCACCAAAGTTT
TTTTCATCTAAATAATAAAGG
ACTAAGGCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAACA
CTGTAGGTGACACTATAGAATGCTACACCGAGTTCCAAGCTCACACCCTC
CACACCCATGCTCCCAAGCTCAAGGTCATCTTCTGGAGTGGGAGGGCTGG
GCCTGCCACTGCTTCCTGAACCTCACTCTCACTTCCTAGGGGGATCCTGG
AAGCTGGGTACGAACTAGGGAAGGAGACATCACCTGGCTGGTTGTAGTAC
CACCACATATTCTCTGGGCTCGGCTCTCTTCTCAGAGGGGAAAAGTGAGG
TTGGAAAAAGGAGATAAGGCAGTGTCCTCCTGTGTTACTCAAGGACCAGA
CTGGAACTCTTCACACAGACCATGCCACAGCCAGGACCCACATACACAGG
AGCCGCTGAAAATGTGTGTCTGGCCAAGAAGGCAGAGAGCTATATCCCCT
GAATGCCAGCAAGGGTCACTTGGCCTCAGAGCGAGAATAGGGCAGAAAAG
GTGAGAAGGCTCCTCCTACTTCCAAATCACATTCCTCTCTTGGGTACATC
TTCCCTATTCCAGAGTCCACAGGGCCTCATGGCCTAGGAAGACCCCTAGA
TTATTCAGTCCACAGTGCTTCCCTGCCTGCCTGTGGCCCCTCCCTCTGCC
TCTACCCCATCTCAAGACGGTTCTACTCACAATATTGCCAATACCTCCCA
ACACTTATTCGCCTGGGGACCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_a05.g1 MSMg01no477_a05.g1 CHROMAT_FILE:
MSMg01no477_a05.g1 PHD_FILE: MSMg01no477_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:19 2005
         (326 letters)



>mm_chr15_73521557_73522282
          Length = 726

 Score =  584 bits (302), Expect = e-171
 Identities = 320/326 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttactcaaggaccagactggaactcttcacacagaccatgccacagccaggacccacat 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gttacccaaggaccagactggaactcttcacacagaccatgccacagccaggacccacat 467

                                                                       
Query: 61  acacaggagccgctgaaaatgtgtgtctggccaagaaggcagagagctatatcccctgaa 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 466 acacaggagccgctgaaaatgtgtgtctggccaaggaggcagagagctatatcccctgaa 407

                                                                       
Query: 121 tgccagcaagggtcacttggcctcagagcgagaatagggcagaaaaggtgagaaggctcc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 406 tgccagcaagggtcacttggcctcagagtgagaatagggcagaaaaggtgagaaggctcc 347

                                                                       
Query: 181 tcctacttccaaatcacattcctctcttgggtacatcttccctattccagagtccacagg 240
           ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tccgactcccaaatcacattcctctcttgggtacatcttccctattccagagtccacagg 287

                                                                       
Query: 241 gcctcatggcctaggaagacccctagattattcagtccacagtgcttccctgcctgcctg 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 acctcatggcctaggaagacccctagattattcagtccacagtgcttccctgcctgcctg 227

                                     
Query: 301 tggcccctccctctgcctctacccca 326
           ||||||||||||||||||||||||||
Sbjct: 226 tggcccctccctctgcctctacccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)