BAC Information

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BAC

Clone NameMSMg01-477L06
Chromosome15 (Build37)
Map Location 68,767,095 - 68,969,868
singlet/doubletdoublet
Overlap geneKhdrbs3
Upstream geneZfat1, LOC100041000, EG665945, EG633752
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477L06.T7 (MSMg01no477_l06.b1)MSMg01-477L06.TJ (MSMg01no477_l06.g1)
ACCAG558992AG558993
length716748
length of high quality
(start - end)		650 (67 - 716)242 (78 - 319)
definitionCHROMAT_FILE: MSMg01no477_l06.b1 PHD_FILE: MSMg01no477_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:13 2005CHROMAT_FILE: MSMg01no477_l06.g1 PHD_FILE: MSMg01no477_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,767,095 - 68,767,744)(68,969,629 - 68,969,868)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAATAAGCGGAATTCT
CTGATTATTCTCCGTGACACCCTTCAGATTTGTCCAATTGCTTAACTCCT
CAGACACTCAATTTGCCCATTCACAAGTTGAGGACCCAATGCTCTGTTAG
TATGATTGGTGGTTCACACACATGTAATACAGAACACACAATAGGTTCTA
AAGTATTACTGCCTGCTGTTGTGGATTGTCCCGAGACAGGTGTGTGAGTA
CTGGTGTCACTTGGCAAACACACTGTGTCTAGTGACCACACACAGATCCT
AGCATTATTATGCATGATAATCTTCTGATATGAGGATGATCTGAGTTTTC
CAGCCCTGGAAGTTCTGGCTTAGGAAGCCCCTTTAATTCCATCAGAACCA
GCAGCCCTGGTTTTATTTCATTACGCTAGTCAGGGCACAGCACCCTAAGC
CTAAATTTAACAAATGAAGTTCCATAAACCTTTTTTTGACCACAGCTTAG
AGCGTGTCTGGACATTGCAGCACAAGAGAGCTTGCTCTGAGCTGGGAGGC
TGTAAATTTCCATGATTTTCACCAATCGACTTCTGCTGCTATTTTAAGAG
TCTTAATGGTGTTCTGGCATCTTACTGGTGCTCTTCTTTGGCGTGGTAAA
GGGCATGGATGTGGGCGAGCAACGTCTTTGATCTCTCCCTTCAGCATATA
TCTTACACTTGGGGGT

NCCTCGATGAAGTGGGAGGCCTGGNGGNCGCCTGGTCGAAAACGGGGGGT
GAACTATAGAAGTACAAAAAAAGGGTATGGTCTACTGCACACAATCTGCA
TTCCTATCCCAGAATTATCTACTCCGGGTTTCATGCCCAGAGCCAGTGGA
GTGATGGTGATGGGGGCAGGAAGGGGTTCTGCCTCCTAGCTTCAGTACAA
CTTCCACATTCTAAGGCTGCTGCTGCTGATAGGATTTTATAAAGGAAAGA
GGATATGGAGAGGGGACAGGGGAGCTGGAAAGAGGAATAAAGGGGGGAAG
GGAGGGAGACAGAGACATTTATAGTTACAGAGACAGAGACAGAGACAGAA
TATCCAGCTTGTTCCCATGGCAGCAAGCTGGGCCTCCAAAAATGGAATCA
AGCAATCCATCTTCCCACCAAATTAGGGCACTAAAGGAGGGAATTGAAAA
TGAAGCCGAGACTGACAAGGAAGTAGATGAAGTATGAAAAGAATCTTTCT
TTTTATGCATTTATACATGAGCACATCGAAACGATCACATCTGAGAGAGG
CCACATTTCCATTTGCACAATGAACTTGTGGCAATAAAATTCAAGATTAA
GGTTGCAATGGTACCAATGATGTGGTGTCCAAATGTGCCTTGAGCCTGTG
TCCAACATGTACACACACACACTCACACACGCGCGCACTCTCTCATACTC
AATTCCCTTTTTTCCATATAGATACATTATGCTCAATAAAATTTTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_l06.b1 MSMg01no477_l06.b1 CHROMAT_FILE:
MSMg01no477_l06.b1 PHD_FILE: MSMg01no477_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:13 2005
         (650 letters)



>mm_chr15_68766895_68767944
          Length = 1050

 Score = 1203 bits (622), Expect = 0.0
 Identities = 643/650 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacccttcagatttgtccaattgcttaactcctcagacactcaatttgcccattcacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacccttcagatttgtccaattgcttaactcctcagacactcaatttgcccattcacaa 260

                                                                       
Query: 61  gttgaggacccaatgctctgttagtatgattggtggttcacacacatgtaatacagaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gttgaggacccaatgctctgttagtatgattggtggttcacacacatgtaatatagaaca 320

                                                                       
Query: 121 cacaataggttctaaagtattactgcctgctgttgtggattgtcccgagacaggtgtgtg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 cacaataggttctaaagtattactgcctgctgttgtggactgtcccgagacaggtgtgtg 380

                                                                       
Query: 181 agtactggtgtcacttggcaaacacactgtgtctagtgaccacacacagatcctagcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtactggtgtcacttggcaaacacactgtgtctagtgaccacacacagatcctagcatt 440

                                                                       
Query: 241 attatgcatgataatcttctgatatgaggatgatctgagttttccagccctggaagttct 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 attatgcatgataatcttctgatatgagggtgatctgagttttccagccctggaagttct 500

                                                                       
Query: 301 ggcttaggaagcccctttaattccatcagaaccagcagccctggttttatttcattacgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcttaggaagcccctttaattccatcagaaccagcagccctggttttatttcattacgc 560

                                                                       
Query: 361 tagtcagggcacagcaccctaagcctaaatttaacaaatgaagttccataaacctttttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtcagggcacagcaccctaagcctaaatttaacaaatgaagttccataaacctttttt 620

                                                                       
Query: 421 tgaccacagcttagagcgtgtctggacattgcagcacaagagagcttgctctgagctggg 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 tgaccacagcttagagcgtgtctggacactgcagcacaagagagcttgctctgagctggg 680

                                                                       
Query: 481 aggctgtaaatttccatgattttcaccaatcgacttctgctgctattttaagagtcttaa 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 aggctgtaaatttccatgattttcaccaatcggcttctgctgctattttaagagtcttaa 740

                                                                       
Query: 541 tggtgttctggcatcttactggtgctcttctttggcgtggtaaagggcatggatgtgggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggtgttctggcatcttactggtgctcttctttggcgtggtaaagggcatggatgtgggc 800

                                                             
Query: 601 gagcaacgtctttgatctctcccttcagcatatatcttacacttgggggt 650
           |||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 801 gagcaacgtctttgatctctcccttcagcataaatcctacacttgggggt 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no477_l06.g1 MSMg01no477_l06.g1 CHROMAT_FILE:
MSMg01no477_l06.g1 PHD_FILE: MSMg01no477_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:13 2005
         (242 letters)



>mm_chr15_68969505_68970146
          Length = 642

 Score =  402 bits (208), Expect = e-117
 Identities = 232/240 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtctactgcacacaatctgcattcctatcccagaattatctactccgggtttcatgcc 60
           |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 364 tggtctactgcacacagtctgcattcctatcccagaattatctactccgcgtttcatgcc 305

                                                                       
Query: 61  cagagccagtggagtgatggtgatgggggcaggaaggggttctgcctcctagcttcagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagagccagtggagtgatggtgatgggggcaggaaggggttctgcctcctagcttcagta 245

                                                                       
Query: 121 caacttccacattctaaggctgctgctgctgataggattttataaaggaaagaggatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 244 caacttccacattctaaggctgctgctgctgataggattttataaaggagagaggagatg 185

                                                                       
Query: 181 gagaggggacaggggagctggaaagaggaataaaggggggaagggagggagacagagaca 240
           ||||||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct: 184 gagaggggataggggagctggaaagagaaagaaagggaggaagggagggagacagagaca 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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