BAC Information

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BAC

Clone NameMSMg01-477N07
Chromosome15 (Build37)
Map Location 26,753,320 - 26,753,995
singlet/doubletsinglet
Overlap geneFbxl7
Upstream genePpia-ps15_175.1, 1810015C04Rik, Zfp622, AK162044, LOC622531
Downstream geneLOC625311, Ank, BC087945, LOC100040622, BC052328, Trio
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477N07.T7 (MSMg01no477_n07.b1)MSMg01-477N07.TJ (MSMg01no477_n07.g1)
ACCAG559089AG559090
length7281,059
length of high quality
(start - end)		681 (48 - 728)---
definitionCHROMAT_FILE: MSMg01no477_n07.b1 PHD_FILE: MSMg01no477_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:23 2005CHROMAT_FILE: MSMg01no477_n07.g1 PHD_FILE: MSMg01no477_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGATCCG
CGGAATTCCCCAAATTTACGAAAAGCAATAGATGTTTTCTGCCCTTTGGG
AGGCTACCGAAGAACTGCAAAGGTGGATCTGGTAAGACAAACAGATAAAC
AGCTCATTAGCATGTCAGACCTGTCGTGCTGACTACTGTTAGGAGCCAGA
AAAACACTTGGGAATCATAGTTCAAAATTATGAGACAGACTTCTAACCAG
ACAAGTACTTCATCTGAAGTTCATGGCTGCATCAAGTTATCAGAGATAAA
GGAGAAGTCAATCTTTCCAAGGTATCTTAAACATCAGTGACCCAAACCAG
CCATGGAGTTAAATAGAATTCTCAAGTCAACTCTATGTTTGGCTGGTGAA
TGCTGCCACAGGCGAGTACTTACACCATTCATAGCATCCTGACTTCCAAA
GACACAGCTTATTCTAGATTGAAGTCCAGCTATTTAAATGTTATCATTCT
ACTCTGAAAGGTGAGCTGTTATGTTCATATGTCAACAAGTCTCATATTCT
GTGAAAGGCATCGACCAATATAATTCAATAAGACAAGAAGATAAGATTAA
CAGTTGTATGCCTTGGGACTACAGAGATGGTCCAGAAGTTATGAGCACTC
AGTGCTCTTGAAAAGGCCTGGAGTTAGATTCCCAATACTCACATCAGACA
ACTTACAACTGCCTCTAACTCCACCTCN

ATTCGCGACTTTAACGTTTTGTGGCTGCGAACCGCGCTGAAGCGCCCACG
TTTCATTCTAGACAGTTCTGTGGAGAGGAGTGTACTTTTCTACTCTTGTA
AACGCGTTACCCTCACACGCAGACAACCACATGTGGTCTGATTTTACCTC
CATTCTTGGCTCTGTCTTGTCTTCTTTTAATTTTGCGGGCAAGAACGCGG
AGCGAGCTAGTGCGCGGGCAATTATCCGTAGACTATGTGAAGTCGACCCC
CTATCCGCGGGAGCGTGCTCCAGGCAGTACTAATTGTAATATATAATATA
ACGCGCACAACATGAACAAGAGGCTGACCGCGCGAGTAATATAAAAGCTT
TAAACACCATCCAACACACACCACCCGTTTTCCTATCTTCGGCTATGTGA
ATGCGCCGCGCGGTTATGTAGCGATCGTCGGCTGGTGTTGCCCTACAACC
TATATGAAGGTTATCTCCCGTCATGTGGTCTAGCGCTTAATGGTCTCCCC
TGTCTTATTTCGCACCCCGTATCCGCGTCTGCCCGTTGTCGTCTGGGTAG
GGTTCCCGCACGGGGCTGTTTGTTATATCCAACCTGTGTTACCAATACTG
AATAAGTGCCGTTGGTCTTATTCGGTATTAACACCGAAAATCTTCAACAA
ACATATACTGCTACGATCATAGAGCGGAGTGCTTTACCAGATTGAGCGCA
TACACCCCGTCCGCCTTATATCCGACCGTTATAAAGGCGGCAATTATATG
GAGTAATGTAAAATGCCGATTCACATACTTTGTTGCACCATTCTTCTTTT
TTCGCGCGCCGCTCGATTTTTCCCCTGATTTTTTCGCATCTTTCCACACG
CCCGACAACGCCACGGCTTATATTATCCGGCGTTTAAGCGCAGCGCGCGC
GCAGTACGGACAGCCGCGTATTAATTGTTTCTTCTTCTTCGCCACGTTGT
GTGCCATAGCGCCGGCCGCACGTATAACCGACCGCATGTATGCTATGAGC
GTCTATATATATACACCGCGCGCGCCNCTCCTCTATAGTAATCTGCCGTC
CTATCACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_n07.b1 MSMg01no477_n07.b1 CHROMAT_FILE:
MSMg01no477_n07.b1 PHD_FILE: MSMg01no477_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:23 2005
         (681 letters)



>mm_chr15_26753115_26754196
          Length = 1082

 Score = 1152 bits (596), Expect = 0.0
 Identities = 656/678 (96%), Gaps = 5/678 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccccaaatttac---gaaaagcaatagatgttttctgccctttgggaggctaccg 62
           ||||||||||||  |||   |||||||||||||||| ||||||||||||||| |||||||
Sbjct: 206 gaattccccaaa--tacaaagaaaagcaatagatgtcttctgccctttgggaagctaccg 263

                                                                       
Query: 63  aagaactgcaaaggtggatctggtaagacaaacagataaacagctcattagcatgtcaga 122
           ||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||
Sbjct: 264 aagaactgcaaaggtggatctggaaagacagacagataaacagctcatcagcatgtcaga 323

                                                                       
Query: 123 cctgtcgtgctgactactgttaggagccagaaaaacacttgggaatcatagttcaaaatt 182
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 cctgttgtgctgactactgttaggagccagaaaaacacttgggaatcatagttcaaaatg 383

                                                                       
Query: 183 atgagacagacttctaaccagacaagtacttcatctgaagttcatggctgcatcaagtta 242
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 atgagacagacttctaaccagacaagtacttcatctgaagttcatggttgcatcaagtta 443

                                                                       
Query: 243 tcagagataaaggagaagtcaatctttccaaggtatcttaaacatcagtgacccaaacca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcagagataaaggagaagtcaatctttccaaggtatcttaaacatcagtgacccaaacca 503

                                                                       
Query: 303 gccatggagttaaatagaattctcaagtcaactctatgtttggctggtgaatgctgccac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gccatggagttaaatagaattctcaagtcaactctatgtttggctggtgaatgctgccac 563

                                                                       
Query: 363 aggcgagtacttacaccattcatagcatcctgacttccaaagacacagcttattctagat 422
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 564 aggcgagtacttacaccattcaaagcatcctgacttccaaagacacagcttattctagat 623

                                                                       
Query: 423 tgaagtccagctatttaaatgttatcattctactctgaaaggtgagctgttatgttcata 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgaagtccagctatttaaatgttatcattctactctgaaaggtgagctgttatgttcata 683

                                                                       
Query: 483 tgtcaacaagtctcatattctgtgaaaggcatcgaccaatataattcaataagacaagaa 542
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 684 tatcaacaagtctcatattctgtgaaaggcatcgaccaatataattcaataagacaagga 743

                                                                       
Query: 543 gataagattaacagttgtatgccttgggactacagagatggtccagaagttatgagcact 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gataagattaacagttgtatgccttgggactacagagatggtccagaagttatgagcact 803

                                                                       
Query: 603 cagtgctcttgaaaaggcctggagttagattcccaatactcacatcagacaacttacaac 662
           || |||||| ||||||||||||||||||||||||| ||| |||||||| || ||||||||
Sbjct: 804 cactgctctcgaaaaggcctggagttagattcccagtacgcacatcaggcagcttacaac 863

                             
Query: 663 tgcctctaactccacctc 680
           ||||||||||||||||||
Sbjct: 864 tgcctctaactccacctc 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1082
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1072
Effective search space:   719312
Effective search space used:   719312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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