Query= MSMg01no478_f19.b1 MSMg01no478_f19.b1 CHROMAT_FILE:
MSMg01no478_f19.b1 PHD_FILE: MSMg01no478_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:04 2005
(240 letters)
>mm_chr15_37444089_37444728
Length = 640
Score = 327 bits (169), Expect = 4e-94
Identities = 191/199 (95%), Gaps = 2/199 (1%)
Strand = Plus / Plus
Query: 1 cccctagggcagccctataagctgccatgaggttctgcgtgcctcctttcccctttcttc 60
||||||||||||||||||||||| | |||||||||| | |||||||||||||||||||||
Sbjct: 201 cccctagggcagccctataagctacaatgaggttcttcttgcctcctttcccctttcttc 260
Query: 61 tcttctgttttgttttccccccccagagctggccagatgctaagttttgttagtttttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttctgttttgttttccccccccagagctggccagatgctaagttttgttagtttttgt 320
Query: 121 acttcaggtacttccattctctataactcccctgcccaccagcccacctgcccacctgcc 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 acttcaggtacttccattctctataactcccctgcccacctgcccacctgcccacctgcc 380
Query: 181 cacctgtccacc--cccac 197
|||||| ||||| |||||
Sbjct: 381 cacctgcccacctgcccac 399
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no478_f19.g1 MSMg01no478_f19.g1 CHROMAT_FILE:
MSMg01no478_f19.g1 PHD_FILE: MSMg01no478_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:04 2005
(609 letters)
>mm_chr15_37614371_37615380
Length = 1010
Score = 1133 bits (586), Expect = 0.0
Identities = 604/610 (99%), Gaps = 1/610 (0%)
Strand = Plus / Minus
Query: 1 ggtcatcagtcttgtgggcaagcacccttcccttttgagacatttcacgtgtccttttag 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ggtcatccgtcttgtgggcaagcacccttcccttttgagacatttcacgtgtccttttag 751
Query: 61 gcccttaactgcaacatgcccttctgactgttttcagttttgtgtgcgagctggggcagg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tcccttaactgcaacatgcccttctgactgttttcagttttgtgtgcgagctggggcagg 691
Query: 121 gagacaggacccttattaatgca-cttctccttgctaatcccagaaatctgtctttatct 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 690 gagacaggacccttattaatgcaccttctccttgctaatcccagaaatctgtctttatct 631
Query: 180 actgtgctccgtgctcccctcctctgctctgaagagcgctgacctttatcaggttttctc 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 actgtgcttcgtgctcccctcctctgctctgaagagcgctgacctttatcaggttttctc 571
Query: 240 cctggtctccagtgagaattctgagatgggttcaagactggtatggactagaaatgttca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cctggtctccagtgagaattctgagatgggttcaagactggtatggactagaaatgttca 511
Query: 300 accaacattaatcctggggcttcaaacagaacaaggttcttccctgttcccctctcccca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 accaacattaatcctggggcttcaaacagaacaaggttcttccctgttcccctctcccca 451
Query: 360 gcctgacactccagagattggaagtaagtggaaaggttggaaggggctttctaaacagtg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gcctgacactccagagattggaagtaagtggaaaggttggaaggggctttctaaacagtg 391
Query: 420 cgatcatcggtcttgggttggtttctcttcattcctcacagataccagtcagcattaggt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cgatcatcggtcttgggttggtttctcttcattcctcacagataccagtcagcattaggt 331
Query: 480 tctcgtgccctaaatgtgacctttccccttgggatttctaggcctcagggacaagccaca 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 330 tctcgtgccctaaatgtgacctttccccttgggatttctaggcctcagagacaagccaca 271
Query: 540 ctcagtcctttctcttcagaggagaaaataacatccataggggaaaagctttcttgttcc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 270 ctcagtcctttctcttcagaggagaaaataacatccataggggaaaagctttcttgtgcc 211
Query: 600 tctgctctgg 609
||||||||||
Sbjct: 210 tctgctctgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1010
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1000
Effective search space: 599000
Effective search space used: 599000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
