BAC Information

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BAC

Clone NameMSMg01-479E09
Chromosome15 (Build37)
Map Location 34,888,395 - 34,888,703
singlet/doubletsinglet
Overlap geneStk3
Upstream geneLOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2, Kcns2
Downstream geneOsr2, Vps13b, EG666183, Cox6c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479E09.T7 (MSMg01no479_e09.b1)MSMg01-479E09.TJ (MSMg01no479_e09.g1)
ACCAG560193AG560194
length753756
length of high quality
(start - end)
609 (72 - 680)309 (326 - 634)
definitionCHROMAT_FILE: MSMg01no479_e09.b1 PHD_FILE: MSMg01no479_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:12 2005CHROMAT_FILE: MSMg01no479_e09.g1 PHD_FILE: MSMg01no479_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCATTCCTGGAGCATAGCACCTTTACAAGACCAAGGGCATC
CTCCCCCCCACCCCATTGATGACTGACAAGGCTATCCTTCAACAGAGGAA
TGCTACATATATACCTAGAGCCACAAGTTCTACCATGTGTTTTCTTTGGT
GGTATAATTCCAAGGAGCTCTAGGGGTACTGGTTAGTTAATATTGATGTT
CCACCTATGGGGCTTTAGACCCCTTCAGCTCCCTGGTTATTTCTCTGGCT
CCTTCATTGGGGACCTTGTTCTCTGTCCAATGGATGACTGTGAGCATCCA
CTTCTGTATTTGCAAGGCACTGGCAGAGCCTCACAGGAGACAGCTATATC
AGGTTCCTGGCAGCAGGCTTTTGTTGGCATCTGCCTAATGGCTGGGTTTG
GTGGTTGTTTATGGGATGGATCAGCACGTGGGGCAGTCTCTGGATGGTGG
TTCCTTCAGGGTCTACTTTGTCTCTGTAACTCCTTCCAAGGGTATTTTGT
TCCCTCTTCTAAGAAGGAACAAAGTATCCACACTTTGTCTTCCTTCTTCT
TGAGTTTCATTTGTTTTGCAAATTGTATCTTGAGTATTCTAAGTTTCTGG
GCTAATATCCACTTATCAGTGAGTACATATTGTGCGAGTTCCTTTGTGAT
TGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAA
GAN
CACAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGCTCCAAAGGATTCTAGAAAACACCGTGTTTGTCTT
ACAGGATGTGCAACAGAAAGGGACCCCAGAGACTGGTGTCCCTTTTCAAT
GCACTCAACCACAGTAAAAAGTACTCATAATGATATTTTGCCTGCAGGAT
GAAGATGAGCTGGATTCACACACTATGGTGAAGACGAGTTCAGAAAGCGT
GTGCACAATGCGGGCCACCAGCACGATGAGTGAAGGAGCCCAGACGATGA
TTGAACATAACAGCACTTGGTTATAGTCGGACCTGGGGACCATGGTTATA
AACAGTGAAGAAGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGACGGAAC
TATGAAAAGTATGGAGCCCTTTCTCTCTGAATGGTGCTTTTCTCTTTTGA
AAGTGTACTCACGAAAACCAGGATAAATTCTGTTTCTTTTTAGAAACAAA
TATGGGAATTTTTGGTTTGGGGATTATTTGACAGCAAATGTCAAAACCTT
TAAAAAAATAAATAAACCTTTAACATGTATGTAGCACTTAACAATACATC
TTTATCTTAGGGTTATGGAACTTTTTTTCTGTTGCAAGCTACAAGCCCAT
AATTTAATTTGTGAAATATTTTTAGGAAGAGGATAGCGTTTCTAACATTT
ACTTTTCCTATTAAAAAGAAAACTTACAATTTTGTTCCACAAATACACCT
AACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_e09.g1 MSMg01no479_e09.g1 CHROMAT_FILE:
MSMg01no479_e09.g1 PHD_FILE: MSMg01no479_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:12 2005
         (309 letters)



>mm_chr15_34888126_34888834
          Length = 709

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcggacctggggaccatggttataaacagtgaagaagaggaggaagaggaagaggagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gtcggacctggggaccatggttataaacagtgaagaagaggaggaagaggaagaggagga 519

                                                                       
Query: 61  ggaggaggacggaactatgaaaagtatggagccctttctctctgaatggtgcttttctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaggaggacggaactatgaaaagtatggagccctttctctctgaatggtgcttttctct 459

                                                                       
Query: 121 tttgaaagtgtactcacgaaaaccaggataaattctgtttctttttagaaacaaatatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tttgaaagtgtactcacgaaaaccaggataaattctgtttctttttagaaacaaatatgg 399

                                                                       
Query: 181 gaatttttggtttggggattatttgacagcaaatgtcaaaacctttaaaaaaataaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaatttttggtttggggattatttgacagcaaatgtcaaaacctttaaaaaaataaataa 339

                                                                       
Query: 241 acctttaacatgtatgtagcacttaacaatacatctttatcttagggttatggaactttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 acctttaacatgtatgtagcacttaacaatacatctttatcttagggttatggaactttt 279

                    
Query: 301 tttctgttg 309
           |||||||||
Sbjct: 278 tttctgttg 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)