Query= MSMg01no479_k09.b1 MSMg01no479_k09.b1 CHROMAT_FILE:
MSMg01no479_k09.b1 PHD_FILE: MSMg01no479_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:43 2005
(676 letters)
>mm_chr15_49418787_49419862
Length = 1076
Score = 942 bits (487), Expect = 0.0
Identities = 550/581 (94%), Gaps = 17/581 (2%)
Strand = Plus / Minus
Query: 1 ttaatatgtgggttgatgacctttctaatcccttttgataaattaatagcaaaaatcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttaatatgtgggttgatgacctttctaatcccttttgataaattaatagcaaaaatcaaa 521
Query: 61 atttgttataaacatgaacttctacacgtacttttattcatctttatcggagtttaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 520 atttgttataaacatgaacttctacacgtacttttattcatctttattggagtttaagtt 461
Query: 121 catttagaaataactaaaaagtcagaagagtatatagagcagaagcttcaagtcctttta 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 catttagaaataactgaaaagtcagaagagtatatagagcagaagcttcaagtcctttta 401
Query: 181 ttaaacagcactcataataaaaagagtttgtattacacaactaaataattagtgctttag 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 400 ttaaacagcactcataataaaaagagtttatattacacaactaaataattagtgcttcag 341
Query: 241 aagattgttatttcaagaaatgccaatagtgcattatgcttaagatagtcgagttaatag 300
|||| ||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct: 340 aagagtgttatttcaagatataccaatagtgcattacgcttaagatagtcgagttaatag 281
Query: 301 tcaagtttctattatttggaaagtaaaatataaaacaaaataatatcaaatattgtaata 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 280 tcaagtttctattatttggaaattaaaatataaaacaaaataatatcaaatattgtaata 221
Query: 361 catgtcaagaaagaatattc----------------atatatatatatatatatatatat 404
|||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 220 catgtcaagaaagaatattcatatatatatatatatatatatatatatatatatatatat 161
Query: 405 atatatatgattctttgaaaaaaagagaattaggtataaatatagatgaataaagtccac 464
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 160 atatatatgattctttg-aaaaaagagaattagttataaatatagatgaataaagtccac 102
Query: 465 aattcacacccagatgtatacaatgttgttagaaatgaacacatgacaggaataaggaca 524
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 101 aattcacacccagatgtatacaatgttgttagaaattaacacatgacaggaacaaggaca 42
Query: 525 ggagaataagagaagagaaaatattattgttgttagggtag 565
||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 41 ggagaataaaagaagagaaaatattatttttgttagggtag 1
Score = 68.4 bits (35), Expect = 2e-15
Identities = 40/43 (93%), Gaps = 3/43 (6%)
Strand = Plus / Plus
Query: 370 aaagaatattcatatatatatatatatatatatatatatatat 412
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 145 aaagaa---tcatatatatatatatatatatatatatatatat 184
Score = 68.4 bits (35), Expect = 2e-15
Identities = 40/43 (93%), Gaps = 3/43 (6%)
Strand = Plus / Plus
Query: 381 atatatatatatatatatatatatatatatatga---ttcttt 420
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 169 atatatatatatatatatatatatatatatatgaatattcttt 211
Score = 62.6 bits (32), Expect = 1e-13
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 381 atatatatatatatatatatatatatatatat 412
||||||||||||||||||||||||||||||||
Sbjct: 159 atatatatatatatatatatatatatatatat 190
Score = 62.6 bits (32), Expect = 1e-13
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 381 atatatatatatatatatatatatatatatat 412
||||||||||||||||||||||||||||||||
Sbjct: 161 atatatatatatatatatatatatatatatat 192
Score = 62.6 bits (32), Expect = 1e-13
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 381 atatatatatatatatatatatatatatatat 412
||||||||||||||||||||||||||||||||
Sbjct: 163 atatatatatatatatatatatatatatatat 194
Score = 62.6 bits (32), Expect = 1e-13
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 381 atatatatatatatatatatatatatatatat 412
||||||||||||||||||||||||||||||||
Sbjct: 165 atatatatatatatatatatatatatatatat 196
Score = 62.6 bits (32), Expect = 1e-13
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 381 atatatatatatatatatatatatatatatat 412
||||||||||||||||||||||||||||||||
Sbjct: 167 atatatatatatatatatatatatatatatat 198
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 8
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_k09.g1 MSMg01no479_k09.g1 CHROMAT_FILE:
MSMg01no479_k09.g1 PHD_FILE: MSMg01no479_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:43 2005
(672 letters)
>mm_chr15_49230827_49231897
Length = 1071
Score = 1214 bits (628), Expect = 0.0
Identities = 664/680 (97%), Gaps = 9/680 (1%)
Strand = Plus / Plus
Query: 1 aattccaggacaatttgacctttactatctaaagtaaagtatttattgttaaaagtgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aattccaggacaatttgacctttactatctaaagtaaagtatttattgttaaaagtgaac 252
Query: 61 tgagtctaagttgtaccttaaaaatacaaatgaagcatcacacataccagagtaaatgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgagtctaagttgtaccttaaaaatacaaatgaagcatcacacataccagagtaaatgac 312
Query: 121 tctttaaaatcataaattgattcggacatttttggtgaaaagggagtattctgaaatata 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 313 tctttaaaatcataaattgattcggacatttttggtgaaaaaggagtattctgaaatata 372
Query: 181 cagctaagaatatagttcttcacatttcataagtaatattgaactttaaaaccatttgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cagctaagaatatagttcttcacatttcataagtaatattgaactttaaaaccatttgtt 432
Query: 241 ttttattaatttcaggaattttaatgtcaatccatattaataacttcttccactaatttt 300
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tttgaagaatttcaggaattttaatgtcaatccatattaataacttcttccactaatttt 492
Query: 301 ctgttgggattgttttccgtgtacctgcatgacattggtataaccaagagaatctcatga 360
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctgttgggattgatt-ccatgtacctgcatgacattggtataaccaagagaatctcatga 551
Query: 361 cctaaagtttatctaaaaattttaaatgattaaaataaatgataaagcaattaaccattc 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cctaaagtttatctagaaattttaaatgattaaaataaatgataaagcaattaaccattc 611
Query: 421 aaataaacattaaagcttttgtttacttattataatgtttaatcattttaa-------aa 473
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 612 aaataaacattaaagcttttgtttacttattataatgtttaatcattttaatcattaaaa 671
Query: 474 agtcacttattgaacctagtaggcttctaaaatgtagcattacttgttctgtatttt-ac 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 672 agtcacttattgaacctagtaggcttctaaaatgtagcattacttgttctgtatttttac 731
Query: 533 ataataattgaacaatttgttggcagccagcttgtttttttaaagtgggaaatgaagaga 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ataataattgaacaatttgttggcagccagcttgtttttttaaagtgggaaatgaagaga 791
Query: 593 acactgtggacttatctcacagcagaataactcatgaaaatattagtgctaaaccaaata 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 acactgtggacttatctcacagcagaataactcatgaaaatattagtgctaaaccaaata 851
Query: 653 tagactgcaactaaattctt 672
||||||||||||||||||||
Sbjct: 852 tagactgcaactaaattctt 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space: 702382
Effective search space used: 702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
