BAC Information

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BAC

Clone NameMSMg01-480C05
Chromosome15 (Build37)
Map Location 66,722,814 - 66,723,091
singlet/doubletsinglet
Overlap geneWisp1
Upstream geneOc90, F930104E18Rik, LOC100040835, Kcnq3, Lrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1, Tg, Sla
Downstream geneNdrg1, LOC100040667, St3gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480C05.T7 (MSMg01no480_c05.b1)MSMg01-480C05.TJ (MSMg01no480_c05.g1)
ACCAG560851AG560852
length861765
length of high quality
(start - end)
---278 (81 - 358)
definitionCHROMAT_FILE: MSMg01no480_c05.b1 PHD_FILE: MSMg01no480_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:21 2005CHROMAT_FILE: MSMg01no480_c05.g1 PHD_FILE: MSMg01no480_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGATAACTAAAAATTGCGGCCGCTAGAACGAAACTCACTAATATGGTCC
CCCACAAAAAAAANAAAAAAGGGGGGGGGGGGGGGGGGGGGGGGNGNGNG
AGGGGGGNNNNNNGAGNGGNNNAAAAAGAGGAAAAAAAAAAGAGAAGAAA
GAAAAAAGANAANAGGAGAGAAAGAGAAAGGAAGAAAGAAAAAAAAAAGA
AAAGAAAAAAAGAGAGAGGGGGGGGGANNNNGGGGNNGGGGAAAATTAGA
TTCCTCCCCCCACAAAGAAAGAAAGGGGAGGGGGNNGGGNNNNNGGGNNG
GGNNNNGGAGATAAGGAATAGGAANGGGAGAGGGGAGGAGGAAAGGGAGA
GGGGGGGGGAGAAAAGAAAATNNNNNGNNNNNNNNNNNGGGGNNNGGGAA
AANNNNNNNGGNATTTNNNGGTGGTTTTAAAAAAAAATTATATTTTGGGN
CCNTNNNNNTGGGNNNTTNCGGGNNGGGTTTNNCCCCCTTGGTTTTTTGA
GAAAAAGAGCAGGGGGAAANNACCCCTTTCCCNNCTCAGAAAAAAAGAAA
AGGAGATGTAAAAGGGCTTTAAACCNNNNNGCGAGAAGCGCCGAAGGAGG
GGGGGAGAAAATAATCCAACCAAAGNGNGTTTGGGNNNGGGGGGAAAAGG
CCGCGCGGAGGGCCACAAANATAGAGAGAAATGCACNCTANGGGGGGGGG
GGGCGCGCGGAAAAAANNNNGNNNNAAANAAAGCCCCCACAGAAAAGAGA
GAAAGAAAAGCTCCTCGACCAAGAGTGAGTGGGGGCGATAATATTTTTTT
TTTTTTTCGCACACCCCAAATGAAAAAAAGTGTTTTTTTTTGTTTCTTTC
AAACGAGGGGG
NGCTATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTCACCTTACCCTGTGGAGTCT
GGGACTTTCCCTTTAAGAGCTGTCAGAGCGGGGAGGCTGGCCAAGCTGGG
CTGGAGGTGGGGACAGAGGAAAGAAAAAGAGAGAGGGGGAGAGTAGCAGA
AAAAGTTTTTTTAGAGGAAAATGCAGGGCTAGTCTGTTGGCCTGACGTCA
GATGTTGCTTTGACAAACGCCCCCGGGGGCTGAGGAAGGCTCTCTGCTGC
TCTGATGGGCCAGCCCAGTCCTGGTCCATCTCCCTGGAGAGGCATCCGCA
TCCTCTGGGCTGAGCCGTAGCTCCTGTGACGCTGACCTTCCGGCATGGAG
GGGGCTCCTGCCCTGGGACGCTGGGCAGTNNNNNCCTGTGGGTTTTCCGG
AAGGGGGGGGCAAACCCCCCTTGGGCCACGGGGGGGAAAACCCCCCCCCT
TCCTTTTTTCCCCTTCCTTTTCTATTTCTCACCCCATCTTTTCGTGGTGT
GGAGATCTTTTTTTTTTTTCTTGTTCCCTCGCTTTTGGCTTCTCTTTTCT
TTCCTCCCTCGCATGTGCTTACTTGCATTTTTGCTCCCCTCCTCGCTTTT
CTTCTCCCTCCCCTCCCCTCCCTCTTTTCTTCCTTTCTTTTTGTCCCCCT
TCCGTTTTTCTTTTTCCGTGACTGTTTTGTGTCCTTTTTCCTTCTCCTTA
TTTTCCTCTCTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_c05.g1 MSMg01no480_c05.g1 CHROMAT_FILE:
MSMg01no480_c05.g1 PHD_FILE: MSMg01no480_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:21 2005
         (278 letters)



>mm_chr15_66722614_66723291
          Length = 678

 Score =  507 bits (262), Expect = e-148
 Identities = 274/278 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccttaccctgtggagtctgggactttccctttaagagctgtcagagcggggaggctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccttaccctgtggagtctgggactttccctttaagagctgtcagagcggggaggctgg 260

                                                                       
Query: 61  ccaagctgggctggaggtggggacagaggaaagaaaaagagagagggggagagtagcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaagctgggctggaggtggggacagaggaaagaaaaagagagagggggagagtagcaga 320

                                                                       
Query: 121 aaaagtttttttagaggaaaatgcagggctagtctgttggcctgacgtcagatgttgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 aaaagtttttttagaggaaaatgcagggctagtctgttggcctgacgtcagatgtcgctt 380

                                                                       
Query: 181 tgacaaacgcccccgggggctgaggaaggctctctgctgctctgatgggccagcccagtc 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tgacaaacgcccccgggggctgaggaaggctctccgctgctctgatgggccagcccagtc 440

                                                 
Query: 241 ctggtccatctccctggagaggcatccgcatcctctgg 278
           |||| ||| |||||||||||||||||||||||||||||
Sbjct: 441 ctggcccagctccctggagaggcatccgcatcctctgg 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)