Query= MSMg01no480_f01.b1 MSMg01no480_f01.b1 CHROMAT_FILE:
MSMg01no480_f01.b1 PHD_FILE: MSMg01no480_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:35 2005
(669 letters)
>mm_chr15_42516045_42517113
Length = 1069
Score = 1272 bits (658), Expect = 0.0
Identities = 664/666 (99%)
Strand = Plus / Minus
Query: 4 ggaattcttcaatgttccttcatctttaaaatggcagcaataacataacctacatattgg 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 ggaattcttcaatgttctttcatctttaaaatggcagcaataacataacctacatattgg 963
Query: 64 ggtgttgtgatgatcataactgatgaggttttgctggaatattgtgtagcacagttgttg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 ggtgttgtgatgatcataactgatgaggttttgctggaatattgtgtagcacagttgttg 903
Query: 124 atatactttaggtactcagtaaacgttagctcttgttaagccaaggctaattggttcata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 atatactttaggtactcagtaaacgttagctcttgttaagccaaggctaattggttcata 843
Query: 184 actggttctttaaatattaactttcttccccctgttttgaactgatgtgtttttatggct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 actggttctttaaatattaactttcttccccctgttttgaactgatgtgtttttatggct 783
Query: 244 ttctgaaggggttgagttaggaatgtcagttctccaaagggactgaaactcttgagaaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ttctgaaggggttgagttaggaatgtcagttctccaaagggactgaaactcttgagaaga 723
Query: 304 aatttatttactattcccctaacactcttccaaatgcaagttcatggaggagtgaaggct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aatttatttactattcccctaacactcttccaaatgcaagttcatggaggagtgaaggct 663
Query: 364 tatcatagatactagataacatacgattcttcctatttccatgtgcaggggaagagtgac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tatcatagatactagataacatacgattcttcctatttccatgtgcaggggaagagtgac 603
Query: 424 tggagttcggtctgttattcattttgattccagaccttcaggtgggcatttctgttggta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tggagttcggtctgttattcattttgattccagaccttcaggtgggcatttctgttggta 543
Query: 484 tacaatactgaagatgcagctgctgccagcagtttctgcaatggcttccctgtatgaggc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tacaatactgaagatgcagctgctgccagcagtttctgcaatggcttccctgtatgaggc 483
Query: 544 ctaggggagttcttcctctgttctctgccaagataaatggatgaacctgtttcagaagaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ctaggggagttcttcctctgttctctgccaagataaatggatgaacctgtttcagaagaa 423
Query: 604 ttgtttgctttgctgaagctattacagaatgaaagcgatcttcaaacatgctggaactaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 422 ttgtttgctttgctgaagctattacagaatgaaagcgatcttcaaacatgctggacctaa 363
Query: 664 tgcaaa 669
||||||
Sbjct: 362 tgcaaa 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_f01.g1 MSMg01no480_f01.g1 CHROMAT_FILE:
MSMg01no480_f01.g1 PHD_FILE: MSMg01no480_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:35 2005
(607 letters)
>mm_chr15_42386279_42387286
Length = 1008
Score = 1137 bits (588), Expect = 0.0
Identities = 603/608 (99%), Gaps = 1/608 (0%)
Strand = Plus / Plus
Query: 1 tctctttgtgaaattccatctcctttgttgcttgcttctggcaaactgagaacatcctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctttgtgaaattccatctcctttgttgcttgcttctggcaaactgagaacatcctga 260
Query: 61 gaatgggtcaagggtcttgcaaaggaatccctgctggcaagattaaatcacagttccaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatgggtcaagggtcttgcaaaggaatccctgctggcaagattaaatcacagttccaaa 320
Query: 121 agccaactgcaacatttttccatgtcagactaggacgttatgacaactgggtactgaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccaactgcaacatttttccatgtcagactaggacgttatgacaactgggtactgaggt 380
Query: 181 ggccacatgacaggaatggaaaatgggaaagtactttcccaaagcaaagtacatcctacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccacatgacaggaatggaaaatgggaaagtactttcccaaagcaaagtacatcctacc 440
Query: 241 aggtattagattttagacctacctaaaattcatgatcctttattgagcatctcaaaattt 300
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 441 aggtattagattttagacctacctaaagttcatgatcctttattgagtatctcaaaattt 500
Query: 301 tcttgcactttgcctattattccttgtaaatgttacatgcatatttatttgtatgtgtac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttgcactttgcctattattccttgtaaatgttacatgcatatttatttgtatgtgtac 560
Query: 361 atattatgatactaagaagaactatttctctattttatacttgtcttacctatgtatgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atattatgatactaagaagaactatttctctattttatacttgtcttacctatgtatgac 620
Query: 421 ccagccaaagaacacataacatcatgtctgactgactcaccatagtgacctcacacacag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagccaaagaacacataacatcatgtctgactgactcaccatagtgacctcacacacag 680
Query: 481 atgattaggaatcttgataagacttggggcttcataaagataataaattttggtacatat 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 atgattaggaatcttgataagacttggggcttgataaagataataaattttggtacatat 740
Query: 541 tattgattctattatttacttacctctacattcttaagtggacaagagagctgctaact- 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tattgattctattatttacttacctctacattcttaagtggacaagagagctgctaactt 800
Query: 600 gtcagttc 607
|| |||||
Sbjct: 801 gttagttc 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1008
Length adjustment: 10
Effective length of query: 597
Effective length of database: 998
Effective search space: 595806
Effective search space used: 595806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
