TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGGGTGACTCTGTTCAAATAAGAGAATAGTGTAAACAACAAAAAGAAA
TCCACAATATGGATTCTGCAAAAATGTGCTCATTATAGCCAGATGTGCTG
GCACGTGCCTGTAGTCCCAGAACACAGATAGTAGATGTGGGAAGACCAAG
GCCAGCCTGGGCTACATGAGATGCTGGCTTAAACAATGAAACTAAAAAGC
TGCCTATAGTGTTCTTTCTAAACTACTCCTTGTTTGATGATTTTGATGTT
TTGAAACAATGTTTCACTCTGTATCCCAGACTGGTCTAGAATTCATTATG
TCACCCAGATCAGCCTTGCACATACAGTCATCCTCTTGCCTGTGCCTCCG
TTGTGCTGGGGTTGAAGGGGTGAGCTGCTTTATTTTGCTCATTTCTTTCT
TTATATACCAAACCATATTTTTGACGTTATAAGATATTTACATTTTAGGG
TTTGTATTTGTTTCTAGCTATGGATACATTTTTGCAAGTCATACAGTTTT
AAGATTTGATTGCTCAACATTAAGGCATGATTAAGACTTAAAGTAGCTTA
GAGAAGAAAAGTAAATTTTTGAAACTTTAACAAAAATGGACTGGAGGTGT
TTCACATATAGAGCTGTTGCATTCTAAATCACCATGAGGATTAAATTCAA
CAGGGTCCATTGAGCCAGAAAACGATAGGTCATGCCTGCATTCCCAGCAT
GCAGGAGGCAGA

TGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTCCTCTGTTTATTTTGATATTTGGGATC
TATCTGCTGAGGCCATAGATACCATCTCATTCATATATATATATATATAT
ATATATATATATGTGTGTGTGTGTATATATATATATATATATATGAGATA
GAGAGGTAGAGATATATATAGAGATAGATATATAGGAGTGGGGGGGGGAT
GGTGTTTTCTGTGGGTAGAGGGATGGGGGGGCGTGTGGGGGGGGGGGGAG
GAGAGTGCGGGAGGAGTGTAGTGTTTTTTATATATGAGAGAGGAGAGGGG
GGCGAGAGGGGTTTTATATAGAGTTTGGGGGGGGGGGGAGGGTGGATATA
TATATAGTTTGTGGGTGGTCTCCTTTGTTGTGGTGTTTTGTTGTTTGTGC
TTTTTAGCGTGTGGTTTGTGCGTTGTATTTGGAGTTGGTGTAGAGAATTG
ATTCTCTCTGTTTGTGTGGGGGTGGGTTATGTGTTGTCGCAAGTGTTGTT
GTTGTTTTTTTGCGCGGTTTGTTTTGGTTTGGGTGGGGAGTGTTGCGGCG
TTTAAGGGTGTGTTTGTTGTTTGGCGGGTTGGGTTTATGGGGTTGTATTT
GGGTGGCGATGTGTGTTTGTGGGCGGTGGGGGGTGTTCGATGCGAATGCT
GCGTTTTGTATGTGTTTTTTTTCGTGGTTTTGTATTTGGTGATCTCGGTC
GCTGTTGGGTTGGTTGGTCGATATGGGTAGGCGGAATATTGGGAGTATAT
GTGGCGGAGATGTCGGAGGTTGTTGGTTATTGGTN

Query= MSMg01no481_e24.b1 MSMg01no481_e24.b1 CHROMAT_FILE:
MSMg01no481_e24.b1 PHD_FILE: MSMg01no481_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:55 2005
         (658 letters)



>mm_chr15_90955948_90957008
          Length = 1061

 Score =  746 bits (386), Expect = 0.0
 Identities = 456/486 (93%), Gaps = 15/486 (3%)
 Strand = Plus / Minus

                                                                        
Query: 180  tgctggcttaaacaatgaaactaaaaagctgcctatagtgttctttctaaactactcctt 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 tgctggcttaaacaatgaaactaaaaagctgcctatagtgttctttctaaactactcctt 1002

                                                                        
Query: 240  gtttgatgattttgatgttttgaaacaatgtttcactctgtatcccagactggtctagaa 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 gtttgatgattttgatgttttgaaacaatgtttcactctgtatcccagactggtctagaa 942

                                                                        
Query: 300  ttcattatgtcacccagatcagccttgcacatacagtcatcctcttgcctgtgcctccgt 359
            |||||||||||||||| | |||| ||||||| |||||||||||| |||||||    ||| 
Sbjct: 941  ttcattatgtcacccaaaacagctttgcacacacagtcatcctcctgcctgt----ccgc 886

                                                                        
Query: 360  tgtgctggggttgaaggggtgagctgctttattttgctcatttctttctttatataccaa 419
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  tgtgctggggttaaaggggtgagctgctttattttgctcatttctttctttatataccaa 826

                                                                        
Query: 420  accatatttttgac--gttataagatatttacattttagggtttgtatttgtttctagct 477
            ||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  accatatttttgacagg--ataagatatttacattttagggtttgtatttgtttctagct 768

                                                                        
Query: 478  atggatacatttttgcaagtcatacagttttaagatttgattgctcaacattaaggcatg 537
            ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||
Sbjct: 767  atggatacatttttgcaagtcgtacatttttaagatttgattgctcaacattaagacatg 708

                                                                        
Query: 538  attaagacttaaagtagcttagagaagaaaagtaaa-----tttttgaaactttaacaaa 592
            ||||||||||||||||||||||||| ||||||||||     |||||||||||  ||||||
Sbjct: 707  attaagacttaaagtagcttagagatgaaaagtaaagttaatttttgaaact--aacaaa 650

                                                                        
Query: 593  aatggactggaggtgtttcacatatagagctgttgcattctaaatcaccatgaggattaa 652
            ||| ||||| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 649  aatcgactgaaggtgtttcacaaacagagctgttgcattctaaatcaccatgaggattaa 590

                  
Query: 653  attcaa 658
            ||||||
Sbjct: 589  attcaa 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1061
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1051
Effective search space:   681048
Effective search space used:   681048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)