BAC Information

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BAC

Clone NameMSMg01-481H03
Chromosome15 (Build37)
Map Location 32,436,462 - 32,436,989
singlet/doubletsinglet
Overlap geneSema5a
Upstream geneMarch6, Cmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik
Downstream geneLOC100040962, Sdc2, Pgcp, 1700084J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481H03.T7 (MSMg01no481_h03.b1)MSMg01-481H03.TJ (MSMg01no481_h03.g1)
ACCAG561850AG561851
length822765
length of high quality
(start - end)
---620 (70 - 689)
definitionCHROMAT_FILE: MSMg01no481_h03.b1 PHD_FILE: MSMg01no481_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:05 2005CHROMAT_FILE: MSMg01no481_h03.g1 PHD_FILE: MSMg01no481_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGGAAGGCGNNAATCGACGAGGGGGGGAGGCAGAGCGGGAGCCCNNNCC
GAACGAGCGGGANAAGAGAGGNNNAGGAACCGCGACGAGAAGGGAGAGAG
AAGNTGAGGGCGGCCGGCCGAGGGAAGGAGAGAGGAAGGNNNGGGGGGCG
GGAAAAGAGGGGGGCGGAAAAAAACAAACACCCAAAAGGGTGCCCAAGAA
AAGCGGCGNNAAAAACGNAAAAAAGGGGTTTCCCCGCGGAAAAAAGAGGC
GCGCTAGAAAGGGGGCCGGGGGGAAAAAGAAAAAAAAAGTGGGGGCGGAG
ACGGGGGGAGGAAAAAAAATAAAAAGAACCCCCCCGGGGGGGCAGAAAAA
AAAAAAAAGGGGGGGGGGGGCCCCCCCCCCAAACACAGAGAGCACCGAAG
CACATTGGGGGAGATCCCAACAAAACAAAAAAAAAACCCCCCGCGGCGGG
GGGGGGGGGGCTACACCAAAAAAAAATTTAAAATAATAAAAAAAAAAAAA
ACACTGGGAACCCCCCGCCGGCGGGAAAAAGAGAGAGGCAAACCCCCCCC
CCCCCCCCCACAAAAAGAAAAAAAAAACAATGGGCGAAAAAGGAGGGGGG
GTAGGGAGGGGGGGGGAAAACAAAAAACAAAAAACGGACCGCCGCACCAC
ACACCACCATATACAAAAACAAAAGGGGGGAGAGGGAGAGAAAACCACAG
AAGAAAACACCCCTCTCAACAGAGGGGGGGGGGGAAAGAGAGGAGAAGAA
AAGAAAAAAAAGCGGAAGAGAGGAGCGAGAAGCTATACAGCACACAAANC
AAAACGAAAAAAGAGAGAGGGG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGACAAAGCACATCACACCCCTCGGCTGGA
CACCACAGTACCTTGTTAACTGGGACCTGCCTAATTATCTTTAATCAATT
CTCTCAACACACGCAAGATAGTGAGTTATATGTGGTGACACAGAAATGCT
GTGTTAGACATAACATGTCCAATAAAGTCATATCCTCTCAATCCAGTGAC
TATTCCTTAGTTGCTGTCTTTTAAGTTTCTATGAGTAATTAAAGATTATC
TCACGGGTACAGCAAATAGCACAGAAGTCAGGGATCATGTGACTGATTAG
TACAAAAAGTGTGTACATGAATCGTGGTGTAATATATACACACACTCTCT
ATCTATCTGTCTGTCTGTATATCTATGTATCTATATAATTACTTTGTTTT
TCTGAAATTTATTCTCCCTATTGAATACTCCTACTCAAATAAAATGCATT
GCAATGAATTTAGCAGTACTTTTCAGTTGACCATAAAACAGTAGCTTATA
CAGCATCTTGAAAGAAACTAATCTGGACAAGGAGAAAACAAAGGGTCTTA
ATTTTCATAATGAAAATTCAAACCCAGATTAGCTTGCTTGAAGGTTCAGT
GTAGACACATCTTGAATGTATTGTGCTTAAAAAAAAAAAACCATCATGTG
GGAGTGAACAAAGAGACAGTGAAGACAGAACTGAAAGACTATAATTCCTT
TCCTTCCCTCCTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_h03.g1 MSMg01no481_h03.g1 CHROMAT_FILE:
MSMg01no481_h03.g1 PHD_FILE: MSMg01no481_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:05 2005
         (620 letters)



>mm_chr15_32436462_32437481
          Length = 1020

 Score = 1013 bits (524), Expect = 0.0
 Identities = 527/528 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacaaagcacatcacacccctcggctggacaccacagtaccttgttaactgggacctg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cagacaaagcatatcacacccctcggctggacaccacagtaccttgttaactgggacctg 469

                                                                       
Query: 61  cctaattatctttaatcaattctctcaacacacgcaagatagtgagttatatgtggtgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cctaattatctttaatcaattctctcaacacacgcaagatagtgagttatatgtggtgac 409

                                                                       
Query: 121 acagaaatgctgtgttagacataacatgtccaataaagtcatatcctctcaatccagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 acagaaatgctgtgttagacataacatgtccaataaagtcatatcctctcaatccagtga 349

                                                                       
Query: 181 ctattccttagttgctgtcttttaagtttctatgagtaattaaagattatctcacgggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctattccttagttgctgtcttttaagtttctatgagtaattaaagattatctcacgggta 289

                                                                       
Query: 241 cagcaaatagcacagaagtcagggatcatgtgactgattagtacaaaaagtgtgtacatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cagcaaatagcacagaagtcagggatcatgtgactgattagtacaaaaagtgtgtacatg 229

                                                                       
Query: 301 aatcgtggtgtaatatatacacacactctctatctatctgtctgtctgtatatctatgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 aatcgtggtgtaatatatacacacactctctatctatctgtctgtctgtatatctatgta 169

                                                                       
Query: 361 tctatataattactttgtttttctgaaatttattctccctattgaatactcctactcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tctatataattactttgtttttctgaaatttattctccctattgaatactcctactcaaa 109

                                                                       
Query: 421 taaaatgcattgcaatgaatttagcagtacttttcagttgaccataaaacagtagcttat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 taaaatgcattgcaatgaatttagcagtacttttcagttgaccataaaacagtagcttat 49

                                                           
Query: 481 acagcatcttgaaagaaactaatctggacaaggagaaaacaaagggtc 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  acagcatcttgaaagaaactaatctggacaaggagaaaacaaagggtc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)