Query= MSMg01no481_p16.b1 MSMg01no481_p16.b1 CHROMAT_FILE:
MSMg01no481_p16.b1 PHD_FILE: MSMg01no481_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:47 2005
(688 letters)
>mm_chr15_58745692_58746779
Length = 1088
Score = 1218 bits (630), Expect = 0.0
Identities = 680/720 (94%), Gaps = 37/720 (5%)
Strand = Plus / Plus
Query: 1 taactatgttatacagctgctagcaagatttgtaacaccaagcagaagaattccttggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 taactatgttatacagctgctagcaagatttgtaacaccaagcagaagaattccttggaa 233
Query: 61 aatacacatgggtcagcaactggcagggtgacccactaggtaaaggtgctaagcccttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aatacacatgggtcagcaactggcagggtgacccactaggtaaaggtgctaagcccttaa 293
Query: 121 catttccagtgaacaacaacaatgaaaaatcccttcactaatatgaaggtaatttaaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 catttccagtgaacaacaacaatgaaaaatcccttcactaatatgaaggtaatttaaagt 353
Query: 181 gtgatctcttataaactaattcagagaactatatatagtactttatttagcaacttattt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtgatctcttataaactaattcagagaactatatatagtactttatttagcaacttatt- 412
Query: 241 tattaaagccaaatattttggttgcttttgctgttcctggtattaactttttgaaatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ----aaagccaaatattttggttgcttttgctgttcctggtattaactttttgaaatgat 468
Query: 301 agactcatccaagtaaagacttacttagaaataaagaggagtgagcaccggagtccagaa 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 469 agactcatccaagtaaagacttacttagaaataaagaggagtgagcagtggagtccagaa 528
Query: 361 tgacaacccatgccgtcagtaatgcccaggacgttagctaaaacccatgctgtcagtaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tgacaacccatgccgtcagtaatgcccaggacgttagctaaaacccatgctgtcagtaat 588
Query: 421 gcccaggtcattaattaaagcctttctcaattcctaagtatagctgctaaagggaaaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gcccaggtcattaattaaagcctttctcaattcctaagtatagctgctaaagggaaaatt 648
Query: 481 acagtcagtaaactccagaggagatgtgcacagtagcatgaacatgacagcagtacagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 acagtcagtaaactccagaggagatgtgcacagtagcatgaacatgacagcagtacagag 708
Query: 541 cacagccctatcactagtgggatgtagcaccaag-------------------------- 574
||||||||||||||||||||||||||||||||||
Sbjct: 709 cacagccctatcactagtgggatgtagcaccaagcagagctaagcgtaaaaaacagacgg 768
Query: 575 ------tcagcgagatgattgactgggtgaagatgctaagcctggtcagtcccgtgacca 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 caacagtcagcgagatgattgactgggtgaagatgctaagcctggtcagtcccgtgacca 828
Query: 629 actctgcagttattctgacctccacacgaataacatggcacatatgtgtacatgtacaca 688
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 829 actctgcagttattctgacctccacacgaataccatggcacatatgtgtacatgtacaca 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_p16.g1 MSMg01no481_p16.g1 CHROMAT_FILE:
MSMg01no481_p16.g1 PHD_FILE: MSMg01no481_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:47 2005
(521 letters)
>mm_chr15_58938312_58939232
Length = 921
Score = 978 bits (506), Expect = 0.0
Identities = 518/522 (99%), Gaps = 2/522 (0%)
Strand = Plus / Minus
Query: 1 ccttgctgcctttgccagactagagtcagaaatagttcctgtagggtcttgttcctcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccttgctgcctttgccagactagagtcagaaatagttcctgtagggtcttgttcctcttc 662
Query: 61 aaggaggctacactttctttgaatagatgctttcacagtataaataagagtgggacaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaggaggctacactttctttgaatagatgctttcacagtataaataagagtgggacaata 602
Query: 121 gttattacatctactaaacaatcatgtaactcgcacaccttgtccttaccactaactagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gttattacatctactaaacaatcatgtaactcgcacaccttgtccttaccactaactagc 542
Query: 181 tcattggttcagttcacctagggacatgtaaaaaatgtctggagatagttcaggctgtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcattggttcagttcacctagggacatgtaaaaaatgtctggagatagttcaggctgtca 482
Query: 241 aaacctgtgttgtgctacaaggtagacaccttagaggctgaacaccctgtgctgcacagg 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaacctgtg-ggtgctacaaggtagacaccttagaggctgaacaccctgtgctgcacagg 423
Query: 301 gggggccctgtccccagcaaatagacactcagcctacaatggtgatgcgatccagaaccc 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gagggccctgtccccagcaaatagacactcagcctacaatggtgatgcgatccagaaccc 363
Query: 361 ctagccaggctgctgatgttcttctca-tttttttttaaggggcacaaatgaagcttgcc 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 362 ctagccaggctgctgatgttcttctcattttttttttaaggggcacaaatgaagcttgcc 303
Query: 420 aaagatatgcaattcgacctggattctgtgagacaggaaggggtgggcaggaatgtccat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aaagatatgcaattcgacctggattctgtgagacaggaaggggtgggcaggaatgtccat 243
Query: 480 ccaaagcccctgctgtcatctgttgattatgaagcttgagat 521
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ccaaagcccctgctgtcatctgttgattatgaagcttgagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
