BAC Information

Click to search

BAC

Clone NameMSMg01-482O04
Chromosome15 (Build37)
Map Location 76,416,721 - 76,417,057
singlet/doubletsinglet
Overlap geneAdck5
Upstream geneGpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b
Downstream geneCpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482O04.T7 (MSMg01no482_o04.b1)MSMg01-482O04.TJ (MSMg01no482_o04.g1)
ACCAG562944AG562945
length760746
length of high quality
(start - end)		34 (173 - 206)337 (79 - 415)
definitionCHROMAT_FILE: MSMg01no482_o04.b1 PHD_FILE: MSMg01no482_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:53 2005CHROMAT_FILE: MSMg01no482_o04.g1 PHD_FILE: MSMg01no482_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTGAATTTGGGGCCGCAAACGACCCCCATTCGCACCCGCCGGGGNGAA
NCCCCCAATACGTCCATCCGCNGAGANAGNNGGAGNNNNGNNCAGCAGGG
AANGGGCCGATTATTCCCCTAAAATGAGGACGTTGCTAGTGACTTTCCTA
GCTTTATAAAAAGAGCGGGGTTATATTCCATCCAGTCCTCTTCCATTTCA
TAACCAGGGTGGTATTGGCGGTGTGGTGGTGGGTGAGGCTGCCTTTTATC
TTATGAACTAGGTTGAGAAGCAGAGGAGTGACTTTCTCTTTCTCCTTGCC
AAATTGCCCTTTTTTTTTTTCAGGGCCAGAACCCACCNGAGCCAGCGCAT
TTTTATTTTTCATTAACTTTTATGGAGGGGTATAGGAGTTTTGCCTACAT
GTGTGTATACCATATGAAGTGCCCATTGAGGCCAGAGAAGGGCAATGAGC
TCCTTGCCCAGNAGTAAAAGGTTACCAGCTGCCATATGGGCGCTGGCAAT
CACACTAGGTCCTCTAAAACAGCAGGCAGGGCTCTAACCACTGGGCCATC
TCTCCAGCCCTCTTATACAGAGCTGCCTAAATATTTCATCTCACTTTACA
TCTGCCAGGCGATATAACTAGAAATTTATACTTTTTAAATAGTTCTCGTT
TTAATAGAATATGGCTATGACCCAACCGACCTCCTAAATTTAATTAGTCC
ATGGCATAATAGCCCTTTCTTTGTAGCCTCCTGTCTGCCCTATCCCGCCT
TCCGTTCTGG

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAACCAGGTCCTCTGGATGCGCAGC
GTTCTTCACCACTGAACCATTTATTCACACCCCACCCTGTTTTGTTTTGT
TTTGAAGCACGGTCTCATTGTATAGCCCTGGGCCTTGAACTTGCTCTGTA
CACCAGACTGGCTTCTAAGTCAGAGATCTACCTGCCTCTTCTCCTCTAGG
TGCTAGGATTGAAGGCGCTGTGCCACCATGGTCAGCCAGTAATAATGAGT
TCCACTCTTAACATTTTCATACATGTATCTCATGCATTTGACCGAGTTCA
CTGCCATCATTCTCTGCTCTCCTCCTCCCAGGCTAGTGATTCTCTTTCCA
AATCACGGCACTTTCCCCCCCCCCCCCCTCATGTGCGGCTGCCTGTGTGT
GTGTGTTTGTGTGTGCATATTTGTGTGTGTGTGCGCGCATGTGCGTGTGC
GCGCGTGTGTGATGTATACCAGTGAATTTCATTAGAGTCAGGCGCGTGGG
TCACTGCTTCACAAAAGCACGGGCCCTTACCACGGGTTCACTGCCTAGTC
ACTCTTCCTTTGTAACACGCTATTTTGATAGGCTCATTCTTACCACCTCT
TATTGCAGCTTTCACAGCTTGCATGTCTTTTAGAATGTCATTACCATATC
ACGGCCTAATAAGACATCTCTGAGAGATTTTGCCCGGTCCTGGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_o04.g1 MSMg01no482_o04.g1 CHROMAT_FILE:
MSMg01no482_o04.g1 PHD_FILE: MSMg01no482_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:53 2005
         (337 letters)



>mm_chr15_76416521_76417257
          Length = 737

 Score =  629 bits (325), Expect = 0.0
 Identities = 334/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaggtcctctggatgcgcagcgttcttcaccactgaaccatttattcacaccccaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaggtcctctggatgcgcagcgttcttcaccactgaaccatttattcacaccccaccct 260

                                                                       
Query: 61  gttttgttttgttttgaagcacggtctcattgtatagccctgggccttgaacttgctctg 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttgttttgttttgaagcagggtctcattgtatagccctgggccttgaacttgctctg 320

                                                                       
Query: 121 tacaccagactggcttctaagtcagagatctacctgcctcttctcctctaggtgctagga 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaccagactggcttctaagtcagagatctacctgcctcttctcctctaggtgctagga 380

                                                                       
Query: 181 ttgaaggcgctgtgccaccatggtcagccagtaataatgagttccactcttaacattttc 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 ttgaaggcgctgtgccaccatggtcagcccgtaataatgagttccactcttaacattttc 440

                                                                       
Query: 241 atacatgtatctcatgcatttgaccgagttcactgccatcattctctgctctcctcctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacatgtatctcatgcatttgaccgagttcactgccatcattctctgctctcctcctcc 500

                                                
Query: 301 caggctagtgattctctttccaaatcacggcactttc 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggctagtgattctctttccaaatcacggcactttc 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |