BAC Information

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BAC

Clone NameMSMg01-484B22
Chromosome15 (Build37)
Map Location 8,806,502 - 8,807,200
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633, Slc1a3
Downstream geneEG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484B22.T7 (MSMg01no484_b22.b1)MSMg01-484B22.TJ (MSMg01no484_b22.g1)
ACCAG563884AG563885
length756772
length of high quality
(start - end)
685 (69 - 753)699 (74 - 772)
definitionCHROMAT_FILE: MSMg01no484_b22.b1 PHD_FILE: MSMg01no484_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:33 2005CHROMAT_FILE: MSMg01no484_b22.g1 PHD_FILE: MSMg01no484_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGG
AATTCTCACCTTTGCATACCGAATGGCAGAGAAGCACTTGAAAAAATGTT
CAACATCCTTAATCATCTGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
AGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAACTGGACATAGTACTACCGGATGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGA
AACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCTA
GGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGAA
GAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACA
AAACAC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCGCTGAACGCTGATACTCAGAGGTACG
GTGCTCTCTGAGATGTGCAAAATGCCCACCCTTGTAGCAACATCCCCTCC
CAGGCTGCTGGGACAGATTAATGACCAGAGGGTTGCAGGCTTCAAAGGCC
TGGATGAACCCCTCCTTCACCCCCCCTCCGCCCCCTCCCCAGGCAGGTCA
GATGGTGGAAGTGCCTCTGATGGGAACAGACACCTGGGAAAATACAAAGG
TTGCAGCCTGGCTCTTTGTTCCAGCTTTTCATTTAGCCGAGCAGAATTTG
CCAGCACTACCCTCTGATGCTTCTTATCATAAAGAGACTTTTGTGCTGTT
GGAGCTGGGGGAAAAATAGTGGGTGTCAGACAAGAAAGCTCCCCAGAGCT
AGGCCTTTTATCCGTGGATACTCAGCTGCCGCATTCGGACCTGGCTGTGT
CTAACAGAGGTTGGCAACACAGTAGTCCCGTATGCTTTGCCTCATATAGT
CAGCTCCACTCACCCTAGAGAATTCACAGGTAGGTGCTTCCAGAACACAC
ACACGGACTTAGTTTTTCCAGACATAGCTCAGTGCCTGTTCCTGTGGGAG
CACAGCATGTGTTTTTGAAGGAATAAACAAACTATTGATTGAACTCCTAT
GAAACACTAGAACAAGGCTTTCTCTTTTAAGAAGCAGAACTATTCATCTT
GGTTTGGCCTTCCTTGCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_b22.g1 MSMg01no484_b22.g1 CHROMAT_FILE:
MSMg01no484_b22.g1 PHD_FILE: MSMg01no484_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:33 2005
         (699 letters)



>mm_chr15_8806302_8807400
          Length = 1099

 Score = 1321 bits (683), Expect = 0.0
 Identities = 695/699 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgctgaacgctgatactcagaggtacggtgctctctgagatgtgcaaaatgcccaccctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgctgaacgctgatactcagaggtacggtgctctctgagatgtgcaaaatgcccaccctt 260

                                                                       
Query: 61  gtagcaacatcccctcccaggctgctgggacagattaatgaccagagggttgcaggcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagcaacatcccctcccaggctgctgggacagattaatgaccagagggttgcaggcttc 320

                                                                       
Query: 121 aaaggcctggatgaacccctccttcaccccccctccgccccctccccaggcaggtcagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggcctggatgaacccctccttcaccccccctccgccccctccccaggcaggtcagat 380

                                                                       
Query: 181 ggtggaagtgcctctgatgggaacagacacctgggaaaatacaaaggttgcagcctggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtggaagtgcctctgatgggaacagacacctgggaaaatacaaaggttgcagcctggct 440

                                                                       
Query: 241 ctttgttccagcttttcatttagccgagcagaatttgccagcactaccctctgatgcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgttccagcttttcatttagccgagcagaatttgccagcactaccctctgatgcttc 500

                                                                       
Query: 301 ttatcataaagagacttttgtgctgttggagctgggggaaaaatagtgggtgtcagacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatcataaagagacttttgtgctgttggagctgggggaaaaatagtgggtgtcagacaa 560

                                                                       
Query: 361 gaaagctccccagagctaggccttttatccgtggatactcagctgccgcattcggacctg 420
           ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 gaaagcttcccagagctaggccttttatccgtggatactcaactgccgcattcggacctg 620

                                                                       
Query: 421 gctgtgtctaacagaggttggcaacacagtagtcccgtatgctttgcctcatatagtcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgtgtctaacagaggttggcaacacagtagtcccgtatgctttgcctcatatagtcag 680

                                                                       
Query: 481 ctccactcaccctagagaattcacaggtaggtgcttccagaacacacacacggacttagt 540
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctactcaccctagagaattcacaggtaggtgcttccagaacacacacacggacttagt 740

                                                                       
Query: 541 ttttccagacatagctcagtgcctgttcctgtgggagcacagcatgtgtttttgaaggaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttccagacatagctcagtgcctgttcctgtgggagcacagcatgtgtttttgaaggaa 800

                                                                       
Query: 601 taaacaaactattgattgaactcctatgaaacactagaacaaggctttctcttttaagaa 660
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taaacaagctattgattgaactcctatgaaacactagaacaaggctttctcttttaagaa 860

                                                  
Query: 661 gcagaactattcatcttggtttggccttccttgccccca 699
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gcagaactattcatcttggtttggccttccttgccccca 899


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)