BAC Information

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BAC

Clone NameMSMg01-484I12
Chromosome15 (Build37)
Map Location 63,326,778 - 63,492,845
singlet/doubletdoublet
Overlap geneEG432959
Upstream geneLOC100040430, Tsg101-ps, EG239502
Downstream geneLOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484I12.T7 (MSMg01no484_i12.b1)MSMg01-484I12.TJ (MSMg01no484_i12.g1)
ACCAG564195AG564196
length763739
length of high quality
(start - end)		428 (330 - 757)572 (81 - 652)
definitionCHROMAT_FILE: MSMg01no484_i12.b1 PHD_FILE: MSMg01no484_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:08 2005CHROMAT_FILE: MSMg01no484_i12.g1 PHD_FILE: MSMg01no484_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,326,778 - 63,327,205)(63,492,296 - 63,492,845)
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCTCTCTTTTTCGGATCCGGTCAGTCTTTTAATAAAAATGCCTC
TATTTCCTGGAAAAAAAAAGAATATTCTAGGAAATGCAAAAACTTCCATG
TGTAACTTTTTAAAATATCAGCTTCGAAAACAGTGAGAAATTGTCCCTCC
TATCTATATTCCTGTAAGTCTTTGTAAGATGGAATGGAATTTTGATCATT
AATTTATATATTGAATCTGAATAAATGTCCAAATTGAAGAACAAAGGTAG
AAGGGAAATACACCAGCAATGGATTTTTATGCCCAGAGAATACACATCCA
GCCCAGGATCTCCTAGAATTTTGAGTTTCAAAATATGAAAGACAGAATTT
CAATAAAGTCTTCCAATGACTCCACTGCGAAGATGCTATAGTCTGCACTA
GTACTATAGACTATAGTCTCCCAGTACTAAAGTTAGTACCCTTGTAAACA
TACCTTAGTTCAGGCTTTGAGTCACATCTTTATAGATTATCTAAAAAGGA
AAAGAAAAAGAGAAAGAAAATTCATCATTCAAAGACTACATTAGCAGAGA
TTGTTAAAGTGTTAAAATAAAGATAGCGGCGTAATGTATGAGAAATTACT
ATTACAGAAACTACAATTGTCACTTCTCATGCCCAGTCTGTTCTACTTTA
GCAATTTAGCAATTTACAGTTACTAATAACTGTCATGGTGGNCAGCACAT
CCATGTCCCCATC

NCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXGAGACACACAGCATCTGAGAGAA
AAGCAAGGTGTGACGGTGGGCACCTATAACCTTAGCACTGGGAGGGCAAG
GTACAGATGGATCCCTGGAGCTCACTAGCCAGCCAGTCTAAGTGGTTGGG
AAGGTATTGGTAAAGAGACTCTGTTCTAAAAACAATAAGGTGGAGAGTGA
AAGAGGTGGGTGTGTGCCATTGACCTCTGGTCTCCACGTGCATGCACACA
TAAGCACCCACCCACATCCCACCACAAAATGAAATTAATCCTCGAGGGAA
GATTCTATCACCCAAGCATAGTGTCAGTGGGAAGAAGAAAAGCCAGGAAC
CTACTTCAAGTATTGAGAAAGCAAAAGGAGAAAAGGGAACCTATGCATAC
AAATGGAAGGACTGATTAGCAAAACTTGAAGATCAGAAGAGGGAAACCAA
TTTTCAACACGATCAGTGGCCAGGCCACAGTTTGATGCTGTGGAGTCCAA
TTCAAATGCCACTGGAAGGTGGTCACTGTGTTTTTCTAGTCTCTGGAGAT
GATGTTCAAATAGTCCATGAGGAGAGAGACATGGTAAAAAGGTTGCAGAC
ACAGGTACTGTGCACAAGTGTGGAAGCCCAGAGAGGTGTCCCAGCTCTTC
ACTCATTTTTGAGACAGGATTTCTTCCTGAGCCTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_i12.b1 MSMg01no484_i12.b1 CHROMAT_FILE:
MSMg01no484_i12.b1 PHD_FILE: MSMg01no484_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:08 2005
         (428 letters)



>mm_chr15_63326578_63327405
          Length = 828

 Score =  806 bits (417), Expect = 0.0
 Identities = 425/428 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcccagagaatacacatccagcccaggatctcctagaattttgagtttcaaaatatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcccagagaatacacatccagcccaggatctcctagaattttgagtttcaaaatatgaa 260

                                                                       
Query: 61  agacagaatttcaataaagtcttccaatgactccactgcgaagatgctatagtctgcact 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 agacagaatttcaataaagtcttccaatgactccacttcgaagatgctatagtctgcact 320

                                                                       
Query: 121 agtactatagactatagtctcccagtactaaagttagtacccttgtaaacataccttagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtactatagactatagtctcccagtactaaagttagtacccttgtaaacataccttagt 380

                                                                       
Query: 181 tcaggctttgagtcacatctttatagattatctaaaaaggaaaagaaaaagagaaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaggctttgagtcacatctttatagattatctaaaaaggaaaagaaaaagagaaagaaa 440

                                                                       
Query: 241 attcatcattcaaagactacattagcagagattgttaaagtgttaaaataaagatagcgg 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 attcatcattcaaagactacattagcagagattgttaaagtgttagaataaagatagcgg 500

                                                                       
Query: 301 cgtaatgtatgagaaattactattacagaaactacaattgtcacttctcatgcccagtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgtaatgtatgagaaattactattacagaaactacaattgtcacttctcatgcccagtct 560

                                                                       
Query: 361 gttctactttagcaatttagcaatttacagttactaataactgtcatggtggncagcaca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 gttctactttagcaatttagcaatttacagttactaataactgtcatggtggccagcaca 620

                   
Query: 421 tccatgtc 428
           ||||||||
Sbjct: 621 tccatgtc 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no484_i12.g1 MSMg01no484_i12.g1 CHROMAT_FILE:
MSMg01no484_i12.g1 PHD_FILE: MSMg01no484_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:08 2005
         (572 letters)



>mm_chr15_63491874_63492845
          Length = 972

 Score = 1064 bits (550), Expect = 0.0
 Identities = 550/550 (100%)
 Strand = Plus / Minus

                                                                       
Query: 23  gcaaggtgtgacggtgggcacctataaccttagcactgggagggcaaggtacagatggat 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 gcaaggtgtgacggtgggcacctataaccttagcactgggagggcaaggtacagatggat 913

                                                                       
Query: 83  ccctggagctcactagccagccagtctaagtggttgggaaggtattggtaaagagactct 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 ccctggagctcactagccagccagtctaagtggttgggaaggtattggtaaagagactct 853

                                                                       
Query: 143 gttctaaaaacaataaggtggagagtgaaagaggtgggtgtgtgccattgacctctggtc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gttctaaaaacaataaggtggagagtgaaagaggtgggtgtgtgccattgacctctggtc 793

                                                                       
Query: 203 tccacgtgcatgcacacataagcacccacccacatcccaccacaaaatgaaattaatcct 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tccacgtgcatgcacacataagcacccacccacatcccaccacaaaatgaaattaatcct 733

                                                                       
Query: 263 cgagggaagattctatcacccaagcatagtgtcagtgggaagaagaaaagccaggaacct 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 cgagggaagattctatcacccaagcatagtgtcagtgggaagaagaaaagccaggaacct 673

                                                                       
Query: 323 acttcaagtattgagaaagcaaaaggagaaaagggaacctatgcatacaaatggaaggac 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 acttcaagtattgagaaagcaaaaggagaaaagggaacctatgcatacaaatggaaggac 613

                                                                       
Query: 383 tgattagcaaaacttgaagatcagaagagggaaaccaattttcaacacgatcagtggcca 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgattagcaaaacttgaagatcagaagagggaaaccaattttcaacacgatcagtggcca 553

                                                                       
Query: 443 ggccacagtttgatgctgtggagtccaattcaaatgccactggaaggtggtcactgtgtt 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggccacagtttgatgctgtggagtccaattcaaatgccactggaaggtggtcactgtgtt 493

                                                                       
Query: 503 tttctagtctctggagatgatgttcaaatagtccatgaggagagagacatggtaaaaagg 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tttctagtctctggagatgatgttcaaatagtccatgaggagagagacatggtaaaaagg 433

                     
Query: 563 ttgcagacac 572
           ||||||||||
Sbjct: 432 ttgcagacac 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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