BAC Information

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BAC

Clone NameMSMg01-484O18
Chromosome15 (Build37)
Map Location 77,806,739 - 77,807,324
singlet/doubletsinglet
Overlap genenone
Upstream geneMb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7
Downstream geneCacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484O18.T7 (MSMg01no484_o18.b1)MSMg01-484O18.TJ (MSMg01no484_o18.g1)
ACCAG564491AG564492
length752703
length of high quality
(start - end)		581 (70 - 650)305 (75 - 379)
definitionCHROMAT_FILE: MSMg01no484_o18.b1 PHD_FILE: MSMg01no484_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:40 2005CHROMAT_FILE: MSMg01no484_o18.g1 PHD_FILE: MSMg01no484_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCACAATCCTAGTCACCCTAGGTTCTGCTATCTGTAGTGTGTG
AACGTGTGAACCTGGACTGTTCTCCACAGGCTTGTGTCTTCCAGATGGTG
GCAATATTTTGGGAGGCTGTGGAGCCTTTCGGAGGTGGCATCTATCTGAC
TGGGGCATGTTGATCATGGAGGGTGAACCCTTGAAGGTCATATCCTCCTC
TGTCCCTAGCTGGCTCTCTCTGCCTCCAGGTCTGCTATCATAAATAGAAA
TTTATACACTGCAACAAACCATTCCAAAATTTGGTCACTTAAACAGCAAC
CAGCCTGTCCTGGTCTTTCAGTTCCCATGGTTGGAGCCTGGGAGCACTGG
CTGATAGACTCTGGCCTGCTGTGTCTGATTCTGCTGGGTTAAAGTTGATA
GAGATAGAGTAGCTGACAAATAATGGTTGTTTGCCTCTCTCCATCTGGTT
ATGAGTCTGCCTGTGTGTTGAGTCCATGTGGGTCTGAGCATCCTCAATAT
GGCGTCCTGGGGTGGTCAGACCACTTATGTGGGCACTGGTAACTTCAAAG
CCAGAAGCTGCACCGCCCACCCTCTACCACGTAGCCTCTGCAGTTTCTCA
GGTTCTTGAGGTCACAAGTGAGTCAACAGTTTTCCAGAGTCAAAGGAAAG
GGATGAAGACTGGTGCCGTGAAGGCAGTGCTAACTGTCAGCTCGGCGCAA
TN

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATAAAATCATCAATACATCTAAGCA
GCATTATTATATGAAAGTACATCTTCATATTGATCTGCAGGAAATTTTCC
CAATAGTGTGGGCTGATTCATTAGGCTCTGTAATAGTGGCATAAAAATCA
TATCAGCTTCGAGAAGCAATCCTGGGATGAAGTCGTTGGGGTCCATGCCT
CTCAGAGAGTGCCATCGCAGCCATGCAAAACGTGGGCCATCTCAGGAAAA
CTCGCTTGCCATAATGTTTTCTACATGGCTTGTGCTATCAGTTGACAGAG
GAGAACCCTTCACATTCCCAGAGAGCCATCNTTCCAGGGCAGCTTGTATA
TTTCTCAACGTTTGACATTTTCTAGGCATGGGTAGCAGTGCAAAAAGCTT
GCTTGGGTCTAAGAAGAACACAGGGTCCCCCCCTCCTATGATTCCATCCC
GGCTGGGACCACTTTGGAATTTCCTGGAACCATCCCCCCCTCCCCGGGGG
GCCCACTCCCCCAAAAAAAAAAAAACAAATGGCGTTGGTGAAACATTTTT
TGGGAAAAAAAAATTTTAAATATATTTTTTTTCCCCCCCCCCCCAACAAA
AAAAGAGGGGGGGGCCTTCCTTCCTCTCTCCGGGTAGATAAAAAAAAAAA
AAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_o18.b1 MSMg01no484_o18.b1 CHROMAT_FILE:
MSMg01no484_o18.b1 PHD_FILE: MSMg01no484_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:40 2005
         (581 letters)



>mm_chr15_77806539_77807524
          Length = 986

 Score = 1067 bits (552), Expect = 0.0
 Identities = 576/586 (98%), Gaps = 5/586 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaccctaggttctgctatctgtagtgtgtgaacgtgtgaacctggactgttctccacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaccctaggttctgctatctgtagtgtgtgaacgtgtgaacctggactgttctccacag 260

                                                                       
Query: 61  gcttgtgtcttccagatggtggcaatattttgggaggctgtggagcctttcggaggtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttgtgtcttccagatggtggcaatattttgggaggctgtggagcctttcggaggtggc 320

                                                                       
Query: 121 atctatctgactggggcatgtt----gatcatggagggtgaacccttgaaggtcatatcc 176
           ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||
Sbjct: 321 atctatctgactggggcatgttgatcgatcatggagggtgaacccttgaaggtcatatcc 380

                                                                       
Query: 177 tcctctgtccctagctggctctctctgcctccaggtctgctatcataaatagaaatttat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctctgtccctagctggctctctctgcctccaggtctgctatcataaatagaaatttat 440

                                                                       
Query: 237 acactgcaacaaaccattccaaaatttggtcacttaaacagcaaccagcctgtcctggtc 296
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagtgcaacaaaccattccaaaatttggtcacttaaacagcaaccagcctgtcctggtc 500

                                                                       
Query: 297 tttcagttcccat-ggttggagcctgggagcactggctgatagactctggcctgctgtgt 355
           ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcagttcccatgggttggggcctgggagcactggctgatagactctggcctgctgtgt 560

                                                                       
Query: 356 ctgattctgctgggttaaagttgatagagatagagtagctgacaaataatggttgtttgc 415
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgatgctgctgggttaaagttgatagagatagagtagctgacaaataatggttgtttgc 620

                                                                       
Query: 416 ctctctccatctggttatgagtctgcctgtgtgttgagtccatgtgggtctgagcatcct 475
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctctccatctggttacgagtctgcctgtgtgttgagtccatgtgggtctgagcatcct 680

                                                                       
Query: 476 caatatggcgtcctggggtggtcagaccacttatgtgggcactggtaacttcaaagccag 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caatatggcgtcctggggtggtcagaccacttatgtgggcactggtaacttcaaagccag 740

                                                         
Query: 536 aagctgcaccgcccaccctctaccacgtagcctctgcagtttctca 581
           |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagctgcatcgcccaccctctaccacgtagcctctgcagtttctca 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 986
Length adjustment: 10
Effective length of query: 571
Effective length of database: 976
Effective search space:   557296
Effective search space used:   557296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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