BAC Information

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BAC

Clone NameMSMg01-485B09
Chromosome15 (Build37)
Map Location 7,643,874 - 7,644,430
singlet/doubletsinglet
Overlap genenone
Upstream gene4921505C17Rik, Osmr, Lifr, Egflam
Downstream geneGdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633, Slc1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485B09.T7 (MSMg01no485_b09.b1)MSMg01-485B09.TJ (MSMg01no485_b09.g1)
ACCAG564616AG564617
length1,423722
length of high quality
(start - end)		---555 (80 - 634)
definitionCHROMAT_FILE: MSMg01no485_b09.b1 PHD_FILE: MSMg01no485_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:54 2005CHROMAT_FILE: MSMg01no485_b09.g1 PHD_FILE: MSMg01no485_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCTTCCTCACTTCTATACTGTGGTGTTCTCATACACACACCACCACA
TACATATCCCCCCAATAGAGTGACGTTATGTGTCCTCGCCGATCGGCGTT
TACCATCTCTAAGAGTTCTTACAGCTATGTACAAGCGGAAGAGAGAAGCC
AACATGATAAATAGGAAGTACATAGAANAAGGNCGGTATGGCGCGCTCAC
TATATATTCTTCTCCTCCCATCGTTTATCATAGCTCGTTTGTATCCCGTC
CGGTCTGTCAGTGGGGACGTGGTGTGATGTGTGTATGAGAGCGACCCGCA
NCACCAGCACGCCACATAGCTCGACAGCAGAGAGTATGTGCAACACTAGT
GTGTGTCAACTATTCATCTAGCAGCCATGTTGCGTGTGACCGCACGCCGT
GTGTGTCACCGCACTGCTGTTTGTGTGTTAGAATTGAGTAGATAGCTATA
CATAAGAAGACAATGAGATACAAAGATGTAACACATGATAATAATAATNA
TATTATATATATAACTATATATAATACGAATATAACACCTACTACTATAT
CNAAGTAACGGACGAGATGAGAGAGTCATAGTTGGCACGATAATAANATC
ATATATATAATGAGTTACGATGATGTGATCGGCTTCGACATATCATACAT
ATTGATTCACATCACATATCATATATTTGTCATAATCCCACCAGCACAAA
TGTCGCTAATATATATGGCATGTATGTGTGCTCATCGTGAGACGTAGCGG
NCGCGATGTTGTGTGTGCTAGAGATCGTTCGACTCTGTGATATGAGCGCG
TCGGATGTAGTCTAGCGCGCAGACCATCAGTTATGATCTCCTCTACTNCA
CTATTATGGAATATTGTTATGTGTGCGACCGCGCGTGCGCATACGTGTAT
TATTATGTAGCCCACNCNCCGAGGTCCACGTCGTCATGCGCGGCTAGATT
GTCGGTCGCGCTACCGCCACTATGTGTGACAGAAGACTCGACACATCACA
GACGGACGTTGCTCGTATCGCTCGGGATGTCGGTGTTGCGATGCTATCGC
GCGCTGCTAGATTACTGACACGTTACACTATCGAGCGCATCGCTGGTGGC
GTAGTATATACACTACCCGCAACCATAGTAGTCGCGAACGACATGACTAT
GTATCGCGAGAGCACGGCCTGCATCGACTCTAGATATTAGTGTAGCGCTG
AGGGTGCGGCTATGGTGCGCTCNTATCTCTGTGTAGTGTCCGCTCNTCTG
TACCGCGATAATTAACGCGANGTCGTCACTCGAGCGAATTCCGCCACTCA
GTATGCATCATATCAGTGTAGTGTACGCACGCACGGATGATAATGATTAA
GAGCACTAGCACCAACTCAATGGAGTAGCGAGTGAGTAGCAAGGTGCTAG
NACCACACAACGAGCCACACTAN

TTTTAACTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTCTGTGCTTCAGGGGCA
CACCTGCTGGGCTGGGCACAGGCTCAGGAGCACCCAGGGGAAATGATCCA
ACAGGTATGCTCCGAAGCAGATGAGCACCATCCCCGTCAGAGTGCAGGGA
GCTCAGGGATTGGGAGGTGGGGAGGACAAAGGGAAGAGGAATTATGGGAA
AGTGCAGAAAGAGGCCTTAGATCTGAAATTGAAGTCCATGTTCAACATAG
CTTTTCCATTCTACCCATTCATTAATATAATAAAGTCTTGCTTTAAAAAA
AAAAGAGAGATGCTGACTCACCATCTAGTCATACATCTGCTTCACGAAGT
CGCTACCCTTAGGCTATAACTTTTTACTGGTCTCTGCCCCTCCCATGCAT
CTCTTAGCCCATGGCACTAGTCTCATTACATAACTTTTCACCCATATGAA
AACTAGCCAAATGATCAAGACTTGTTTTCAGAATGAAAGAAAGACTAGCA
ACCGCCTGTGTCATGACAAATAGGTCTTGCAGACTTTAGAAAAGGCACGA
CTGTTCATGCGTGTCTGAATTTAAACCTTCTCCCTAGGTGGGCGAGAGAG
ATAGTGCAGTGGTTAGGAGCACTTGCTGACCTTCTAGAAGATCTGAGTTC
AATTCCCAGAACTTATGTCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_b09.g1 MSMg01no485_b09.g1 CHROMAT_FILE:
MSMg01no485_b09.g1 PHD_FILE: MSMg01no485_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:54 2005
         (555 letters)



>mm_chr15_7643674_7644630
          Length = 957

 Score = 1015 bits (525), Expect = 0.0
 Identities = 549/557 (98%), Gaps = 2/557 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttctgtgcttcaggggcacacctgctgggctgggcacaggctcaggagcacccaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttctgtgcttcaggggcacacctgctgggctgggcacaggctcaggagcacccaggg 260

                                                                       
Query: 61  gaaatgatccaacaggtatgctccgaagcagatgagcaccatccccgtcagagtgcaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatgatccaacaggtatgctccgaagcagatgagcaccatccccgtcagagtgcaggg 320

                                                                       
Query: 121 agctcagggattgggaggtggggaggacaaagggaagaggaattatgggaaagtgcagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctcagggattgggaggtggggaggacaaagggaagaggaattatgggaaagtgcagaa 380

                                                                       
Query: 181 agaggccttagatctgaaattgaagtccatgttcaacatagcttttccattctacccatt 240
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ggaggccttagatctgaaattgaagtctatgttcaacatagcttttccattctacccatt 440

                                                                       
Query: 241 cattaatataataaagtcttgctttaaaaaaaaaa-gagagatgctgactcaccatctag 299
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 cattaatataataaagtcttgctttaaaaaaaaaaagagagatgctgactcaccatctag 500

                                                                       
Query: 300 tcatacatctgcttcacgaagtcgctacccttaggctataactttttactggtctctgcc 359
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatacatctgcttcacgaagtcgatacccttaggctataactttttactggtctctgcc 560

                                                                       
Query: 360 cctcccatgcatctcttagcccatggcactagtctcattacataacttttcacccatatg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctcccatgcatctcttagcccatggcactagtctcattacataacttttcacccatatg 620

                                                                       
Query: 420 aaaactagccaaatgatcaagacttgttttcagaatgaaagaaagactagcaaccgcctg 479
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaactagccaaatgatcgagacttgttttcagaatgaaagaaagactagcaaccgcctg 680

                                                                       
Query: 480 tgtcatgacaaataggtcttgcagactttagaaaaggcacgactgttcatgcgtgtctga 539
           ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 681 tgtcatgacaaataggtcttgcagactttagaaaaggcacggctgttcatgtgtgtctga 740

                            
Query: 540 atttaaa-ccttctccc 555
           ||||||| |||||||||
Sbjct: 741 atttaaaaccttctccc 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 957
Length adjustment: 10
Effective length of query: 545
Effective length of database: 947
Effective search space:   516115
Effective search space used:   516115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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