BAC Information

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BAC

Clone NameMSMg01-485C18
Chromosome15 (Build37)
Map Location 50,424,868 - 50,425,114
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039539, LOC665160
Downstream geneTrps1, LOC100039644, LOC100039662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485C18.T7 (MSMg01no485_c18.b1)MSMg01-485C18.TJ (MSMg01no485_c18.g1)
ACCAG564680AG564681
length731740
length of high quality
(start - end)		671 (51 - 721)247 (80 - 326)
definitionCHROMAT_FILE: MSMg01no485_c18.b1 PHD_FILE: MSMg01no485_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:01 2005CHROMAT_FILE: MSMg01no485_c18.g1 PHD_FILE: MSMg01no485_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTAAACCTGTTACACAGCTTCAGTGACTCAAATTAACTCA
AACAAGTCAATGGCCTTTCTCTACACAAGGAATAAACAAGCTGAGAAAGA
AATTAGGGATACAACACCCTTCTCAATAGTCACAAATAACATAAAATACA
TTGGCATGACTCTAAGGAAGTGAAAAATCTGTATGATAAAAAAATTTAAG
TCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCC
ATGATCATGGATTGGTAGGATCAACATTGTAAAAATGGCTATCTTGCCAA
AAGCAACCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTC
TTCAACAATTAGAAAGAGCAATCTGCAAATTCATCTGGAATAACAAAAAC
CTAGGATAGCAAATCTCTTCTTAAGGATAAAAGAATCTCTGGTGGAATCA
CCATGCCTGACCTAAAGCTTTACTACAGAGAAATTGTGATAAAAATGGCA
TGGTACTAGTATAACAACAGAAAAGTAGACCAATGGAATAGAATTGAAGT
CCCAGAAATGAACCCACACACCTATGGTCTCTTGATCTTTGACAAGGGAG
CTAANACCATCCAGTGGAAAAAAGACAATATTTTCAACAAATGGTGCTGG
CACAACTGGTGGTTAACATGTAGAAGAATGN

NNTTTGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGACTGATACATTTCTTT
TTTTTTTTTTTTTTTTTTTTTTTGGGTTTCTAGATATCTGAATAGTAATT
CAATGTCCTCCAGTAATTTTGTATTGTTGGAGGGCTAAACAATTTCACCA
GGAAACAGTTGGTACTAAATGCAATTTCTCTCTATGTCTTACACTGGGGT
TCACCAAATTACTTTTTAAAATGGCAGTGAAACAGTTTGAAAGACAACGC
AAGGAGAATTTCAACGATTTTCACTTCATAGAAAAGAACATTCGTCCAGA
TGCATTCCTTGCTTTCTCCTGCTTCTGGGTTTGTCATCCTTTGAGGATGT
GGAATCACGTAAAAATAAAATCTCCTTTTTCATCTTATAAGTCATCTTAC
ATATGAAAAACAATCACAATGGTTATAAACAACAATTAGCCTGTATCTAA
TTAACAGGGAAACCTGTTGTTGCTATGGAACAAGGGTAAGACATTACTTA
TCCTGGTTCTCCACTCTAGATGACAAGTAGTATGGGTATCAAAAAACAGA
ATTCCCACCTTTTAATTAAAAAGAAAAAAATCCAAGTTAATGGCTTGGAT
TAAAGTGAATTTGTAATTGAAAAGAATTAATGGTCTTTTGAGAAATTTTT
AGGACTTGGAAAATAAGGATGACAATATGTATTATTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_c18.g1 MSMg01no485_c18.g1 CHROMAT_FILE:
MSMg01no485_c18.g1 PHD_FILE: MSMg01no485_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:01 2005
         (247 letters)



>mm_chr15_50424621_50425267
          Length = 647

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagactgatacatttcttttttttttttttttttttttttttgggtttctagatatct 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 494 ttcagactgatacatttcttttttttttttttttttttttttttggttttctagatatct 435

                                                                       
Query: 61  gaatagtaattcaatgtcctccagtaattttgtattgttggagggctaaacaatttcacc 120
           || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 434 gagtagtaattcaatgtcctccggtaattttgtattgttggagggctaaacaatttcacc 375

                                                                       
Query: 121 aggaaacagttggtactaaatgcaatttctctctatgtcttacactggggttcaccaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 374 aggaaacagttggtactaaatgcaatttctctctatgtcttacactgtggttcaccaaat 315

                                                                       
Query: 181 tactttttaaaatggcagtgaaacagtttgaaagacaacgcaaggagaatttcaacgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tactttttaaaatggcagtgaaacagtttgaaagacaacgcaaggagaatttcaacgatt 255

                  
Query: 241 ttcactt 247
           |||||||
Sbjct: 254 ttcactt 248


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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