AGTGAGGACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCATGTTTCCTATGTGTGGAATCTATATCTCCGGAGTGA
GGAGAGGCTCAGCTATTCATTCGGAGTACAAAATGGTTGTTTTGTTATTG
GCACAGGAAAATCTTGGTACAAGCTTTCTAGTTGTTTGGTGGGGAGTCCT
CATTCTCCAGTGCGCACTGGCACAGCGGAGCTTCATGGAGTTTTACACTG
TCCTGGCAAGTAGCTCTTTAGCACATGTGACTAGGAAGCAGAAGAGATGA
CACAACTGAGGACATTATTAAGCTTTAATTAATTTAAATTTAGATAGCTT
CACTGAGCTTATTACATTAGGCTGTGCAAGCCTTGGGTAATAATTATAAG
AGTAGCGGTTGATAATAGTTCTTCTTCACAGGACTCTCAGAAGTGGGTCC
TGTTTTTCTGATTATAGCTGTGGGGTGGAAGAAAGAAAGATATGAAGGAA
ATGACTAAGAATCAACCAAGTTGGGACATGTGTCCAGGTCAGTCGCTATT
CAAAATGACCAAGTGTGAGTGACTACAAGCTTCTATTGCCTCCTCATAGC
CACACAAGGACATACTAGGTGCCGTGACAGGAGAGGGGAGATATGAGTAT
TACAAGCGGTGACTGTGAGGAATTCAGAATTCCTGGGAGGTTCAATGAGG
ATATGCTTAGTTGCC

TTCTTTTTGTTCGATTTCTTGTGCGTTNTGTGCCGCAGGCGGCGCTGTGT
TGGGCTTTTCCTTATATGTAGTGGTAGAGCCCCNTGTAGTGTGTGTCTCT
CTCCTACAACGCCCTGTCTCTCGGGCGTGGTGCCGCTTCGTGGCGGAGAG
CACCAGAGGAGGGTGTTGTGCGCCCTAGCTGTTGAGTTTCTGTTATATTT
TTGATCCGTGTATACGCTTTATATCGTTGATACCTGCGTTACGTGTCTAT
GATGACTATGCGGTAGATGTAATTTTTATATACTCGACAGAGGGCGCGAT
TCTCCACACTANATTAGACAACTAATAGATATCATCAGCTCATGTATGTG
TCTATAAGTACTAACGATATGTTCTACAGTCGTGTGTTGTAGGTGAGTCT
GAGTTGACCGCGCTTTGCGGCCCGAGCCAGCGTCAGGAGCGCTTCAATTG
CATCGACTCATTATTGCCCAGAGTTCGCCGTAACCAATTGGCGGGATATA
GCCGCTATGTGTAGTGCTCGACATCACGCACGGCCCTATATAAGTGTGAC
ATCGTCTAGTTGTATGAGAACTCACTACTAACATTCTTATTGTGTATACA
CGCAGTTTGATACTCATATGTGTGTGTTTAACTATATCCGTTCATCGTTC
AGATCCACGCACGCTCTGTTGTCGTGCAGTGTTATCTCGTACAAGCTATG
AAATTTATGCTTAATCNACTGCAGTTGTCGGGGTGCTGCTTATCATGCGA
CTCTATGCCACCTCTTTATCTCGCCGCGCATATAGCTGTGTCTATCGCAC
CAGCTGTTCTATATATGTGTTGTATTGACTCATGATATCGTCGTCTATTT
CCGCGACTTCTTGTTCTGTGTGTCGCCGNTNTATTCGGTCATAGGATGTA
ATCGNACGAGAGTTGTGTCTGGATGTGTCGTCCCTTGCTCTGTGTTGCGA
TGTACTAGAGCGATACGTAGTAGATATCACCTAGTGTAAGCGCACATCTT
GTGTCGCGTAGTTTTGTCTTACTCGTGCACTGATCGTGATGCTTGTGATC
TACCAGCTGCGCGCGTCAGAGGTCAATCTACTACGTGAGGAGGTCTAGGA
GTGGACTTGTCAGGTACAACATGTCTGACATGATGACTGTGGTAGTGTGT
GTGTCGCGNGTACTTATGTGACAGCTGTACAGGATGATCGAGATANCATG
CGACTCGTGTGCACATCTAGCTATATGCTATATCTATCGTTATAGAACAG
CACACCTATATGATTTTATCN

Query= MSMg01no485_o13.b1 MSMg01no485_o13.b1 CHROMAT_FILE:
MSMg01no485_o13.b1 PHD_FILE: MSMg01no485_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:02 2005
         (600 letters)



>mm_chr15_55477476_55478475
          Length = 1000

 Score = 1064 bits (550), Expect = 0.0
 Identities = 585/600 (97%), Gaps = 7/600 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatgtttc----ctatgtgtggaatctatatctccggagtgaggagaggctca 60
           |||||||||||   |    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctcatg---cacaactatgtgtggaatctatatctccggagtgaggagaggctca 260

                                                                       
Query: 61  gctattcattcggagtacaaaatggttgttttgttattggcacaggaaaatcttggtaca 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 gctattcattcggagtacaaaatgattgttttgttattggcacaggaaaatcttggtaca 320

                                                                       
Query: 121 agctttctagttgtttggtggggagtcctcattctccagtgcgcactggcacagcggagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctttctagttgtttggtggggagtcctcattctccagtgcgcactggcacagcggagc 380

                                                                       
Query: 181 ttcatggagttttacactgtcctggcaagtagctctttagcacatgtgactaggaagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatggagttttacactgtcctggcaagtagctctttagcacatgtgactaggaagcag 440

                                                                       
Query: 241 aagagatgacacaactgaggacattattaagctttaattaatttaaatttagatagcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagagatgacacaactgaggacattattaagctttaattaatttaaatttagatagcttc 500

                                                                       
Query: 301 actgagcttattacattaggctgtgcaagccttgggtaataattataagagtagcggttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgagcttattacattaggctgtgcaagccttgggtaataattataagagtagcggttg 560

                                                                       
Query: 361 ataatagttcttcttcacaggactctcagaagtgggtcctgtttttctgattatagctgt 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 ataatagttcttcttcacaggactcttagaagtgggtcctgtttttctgattatagctgt 620

                                                                       
Query: 421 ggggtggaagaaagaaagatatgaaggaaatgactaagaatcaaccaagttgggacatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggggtggaagaaagaaagatatgaaggaaatgactaagaatcaaccaagttgggacatgt 680

                                                                       
Query: 481 gtccaggtcagtcgctattcaaaatgaccaagtgtgagtgactacaagcttctattgcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 681 gtccaggtcagtcgctattcaaaatgaccaagtgtgagtgactacaagcctctactgcct 740

                                                                       
Query: 541 cctcatagccacacaaggacatactaggtgccgtgacaggagaggggagatatgagtatt 600
           ||||| || ||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 cctcaaagtcacacaaagacatacaaggtgccgtgacaggagaggggagatatgagtatt 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)