Query= MSMg01no489_f14.b1 MSMg01no489_f14.b1 CHROMAT_FILE:
MSMg01no489_f14.b1 PHD_FILE: MSMg01no489_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:33 2005
(588 letters)
>mm_chr15_16396312_16397299
Length = 988
Score = 949 bits (491), Expect = 0.0
Identities = 558/585 (95%), Gaps = 10/585 (1%)
Strand = Plus / Plus
Query: 5 gaattctcagattcct-aaaatgtcgcattttcaaatatttgttctctttcacacacaca 63
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattctcagaatcctaaaaatgtcgcattttcaaatatttgttctctttcacacacaca 272
Query: 64 cacacacacacacacacacacacacacacacacacacacataccaaacaaatatttttga 123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 273 cacacacacacacacacacacacacacacacacacac----accaaacaaatatttttta 328
Query: 124 aaccaaattttatttcattgttattttttatttttgttttgttttgatttgtttttcgag 183
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 329 aaccaaattttatttcattgttatt-----tttttgttttgttttgttttgtttttcgag 383
Query: 184 acaggatttttctgtgcagcccttgctgtccttgaactcactttgtagaccaggctggcc 243
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acagggtttttctgtgcagcccttgctgtccttgaactcactttgtagaccaggctggcc 443
Query: 244 tcgaactcagaaatccacctacctttgcctcctgagtgctgggattaaaggcgtgcatca 303
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 tctaactcagaaatccacctgcctttgcctcctgagtgctgggattaaaggcgtgcacca 503
Query: 304 ccatgcccggctcactgttaaattcttaagcactaaattaattcaaactctaattaaaga 363
||||||| |||||| ||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 504 ccatgcctggctcattgttaaatttttaagcaataaattaattcaaactctaattaaaga 563
Query: 364 aaaatatttaaattaatgaaacagttggtattcttaggtataagtcactttaaaacagtg 423
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaatatttaaattaacgaaacagttggtattcttaggtataagtcactttaaaacagtg 623
Query: 424 ttaaaacttataagtcttagtacagagcaagcatgatactatatatgttgatatgaatat 483
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttaaaacttacaattcttagtacagagcaagcatgatactatatatgttgatatgaatat 683
Query: 484 acattaatatcaatgctatttcatttagcagtaaagttcaaatttcattaagacatgttc 543
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 684 acattaatatcaatgctatttcatttagcagtaaagttcaaatttcattaagtcatgttc 743
Query: 544 aacccattaaaattgaaaagaaacaggtaaaataggtaaagtgga 588
| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 744 agcccattaaaattgaaaagaaataggtaaaataggtaaagtgga 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_f14.g1 MSMg01no489_f14.g1 CHROMAT_FILE:
MSMg01no489_f14.g1 PHD_FILE: MSMg01no489_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:33 2005
(561 letters)
>mm_chr15_16521386_16522353
Length = 968
Score = 992 bits (513), Expect = 0.0
Identities = 552/571 (96%), Gaps = 13/571 (2%)
Strand = Plus / Minus
Query: 1 gcaaaattttagtacttttttttgcacatttttaatgaaactgaacatgacaaaaatgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gcaaaattttagtacttttttttgcacatttttaatgaaactgaacatgacaaaaatgtg 709
Query: 61 tgtt-aaaatcactgcacatcagagttacattaatcaaaatattgctgtataaattgtac 119
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 708 tgttaaaaatcactgcacatcagagttacattaatcaaaatattgctggataaattgtaa 649
Query: 120 aaatttgtcatggttgaagtatgaataattctacattt--atccagaagtagcaaataca 177
|||||||||||||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct: 648 aaatttgtcatggttgaagtatgaataattctacatttaga---agaagtagcagataca 592
Query: 178 atgttcaaccaaatagtgtgttgataaactatctttgcttattcagcttcattgggaact 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 atgttcaaccaaatagtgtgttgataaactatctttgcttattcagcttcattgggaact 532
Query: 238 gggcaggatttagagtgaagggggaggaaagaattactcgaggttgtattcttggcaaat 297
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 531 gggcaggatttagagtgaatggggaggaaagaattactcgaggttgtatccttggcaaat 472
Query: 298 attttcagagagagacttaactgaagagttagttac-------tatcatcccatgagcta 350
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 471 attttcagagagagacttaactgaagagttagttactatctaatatcatcccatgagcta 412
Query: 351 tggaatagaagcaatgtggcaatagatttttaaaactcttctttctgctttttgaccaac 410
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 411 tggaatagaagcaatgtggcaatagattttttaaactcttctttctgctttttgaccaac 352
Query: 411 aaggcatgaaattctcttttctcttcctttcttaactaccagtttggcttgagcactctg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaggcatgaaattctcttttctcttcctttcttaactaccagtttggcttgagcactctg 292
Query: 471 gaaatgtgagctacagtaactatctttctttacatagtttctctcaggtttgtttctcac 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gaaatgtgagctacagtaactatctttctttacatagtttctctcaggtttgtttctcac 232
Query: 531 agcaatgaaattatataatacaaagtagtgc 561
|||||||||||||||||||||||||||||||
Sbjct: 231 agcaatgaaattatataatacaaagtagtgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 968
Length adjustment: 10
Effective length of query: 551
Effective length of database: 958
Effective search space: 527858
Effective search space used: 527858
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
